Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15413g00017 ATGACAAATAGTCTGGTTTGGGTATCAAAAACAAAAATCAAGAAAATAATGGAAGCACATCCTACTTTCTCCATTGAAAGATCAAAGCAACTCAATAGCATGGGGATGTCTGGAGCACTTTCTTCATCTTTGTCAATCCTTCCAATACCCACAGAAGATATGTATCCTAGGCTGCCTGAATCACAATTGGATATTGTAGATCAAGAACTTATGACAAGACCTTATACTCATTCAAGTTATTTGAATTCCAACGGAGTAGTTGGGCATATTTTTTCGTCTTCCTCTGCAAATTCAATTGACCTTCATCACTCATCTCTTTCACCTGATGAAAAAAACTCTTCTAACGCTCATTTTATTTCACAATCATCAACCAACATTGCCCAATTTCCATTATCATATTCTTCGAGTACTGCACCACCAACTTCAGCAACACCAACCCATTTTTCCAAAGAAAACAGTGCTTCCTGGCATACAGAGTCCCTGCCAAGTTTTCTGGATTTTCCTGCACATGACTCAATGGACGATAATAGGGTAGAAAGTAGTGATTGCCCTATAATGGCATCCGAGGAGTATTCTAAGCAAAATGATTGGCAGGAGTGGGCTGAGCGGCTAATCAGTGATGATGACACTTTGACTTCTAATTGGGATGACCTTCTCACTGACAACATTCGAGACATTGAGCCAAAGGTTGCAAAACCACTTTCACAGTTTCCAGGACATCAATCCCAAGGTCTACAACAACTTCCTGCTTCATATGGAGACAATTGCTCTGGAGCTACCCTCTCCTCCTCAGCAAATTCTACTCCTGCCAAGTCACGAATGCGTTGGACACCAGAACTTCACGAGGCGTTTGTGGAGGCTGTCAACCAACTTGGGGGAAGTGAAAGAGCTACTCCAAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTGAAAAGCCATTTGCAGAAATACAGGACAGCTAGATATAGACCGGAGTCATCTGAAGGAGTTGCGGAGAAAAAAGCAGGTTCCATTGAAGAGATGTCATCTCTAGATTTAAAAACTGGTATTGAGATCACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGGTGTGA 1137 0.4169 MTNSLVWVSKTKIKKIMEAHPTFSIERSKQLNSMGMSGALSSSLSILPIPTEDMYPRLPESQLDIVDQELMTRPYTHSSYLNSNGVVGHIFSSSSANSIDLHHSSLSPDEKNSSNAHFISQSSTNIAQFPLSYSSSTAPPTSATPTHFSKENSASWHTESLPSFLDFPAHDSMDDNRVESSDCPIMASEEYSKQNDWQEWAERLISDDDTLTSNWDDLLTDNIRDIEPKVAKPLSQFPGHQSQGLQQLPASYGDNCSGATLSSSANSTPAKSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVAEKKAGSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15413g00017 378 Pfam MYB-CC type transfactor, LHEQLE motif 356 378 IPR025756 -
Vium15413g00017 378 SUPERFAMILY Homeodomain-like 268 325 IPR009057 -
Vium15413g00017 378 MobiDBLite consensus disorder prediction 131 153 - -
Vium15413g00017 378 Gene3D - 270 329 - -
Vium15413g00017 378 NCBIfam myb-like DNA-binding domain, SHAQKYF class 271 325 IPR006447 GO:0003677
Vium15413g00017 378 Pfam Myb-like DNA-binding domain 273 324 IPR001005 -
Vium15413g00017 378 FunFam Myb family transcription factor 270 328 - -
Vium15413g00017 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 253 378 IPR044848 GO:0003700
Vium15413g00017 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 268 328 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15413g00017 Vium-Chr15413 83851 87423 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15413g00017 48 378 G2-like Transcription Factor Family AT4G28610 46.802 1.68e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium15413g00017 Myb_DNA-binding 6.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15413g00017 - - vum:124823159 721.85