Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15413g00013 ATGGAAGCACATCCTACTTTCTCCATTGAAAGATCAAAGCAACTCAATAGCATGGGGATGTCTGGAGCACTTTCTTCATCTTTGTCAATCCTTCCAATACCCACAGAAGATATGTATCCTAGGCTGCCTGAATCACAATTGGATATTGTAGATCAAGAACTTATGACAAGACCTTATACTCATTCAAGTTATTTGAATTCCAACGGAGTAGTTGGGCATATTTTTTCGTCTTCCTCTGCAAATTCAATTGACCTTCATCACTCATCTCTTTCACCTGATGAAAAAAACTCTTCTAACGCTCATTTTATTTCACAATCATCAACCAACATTGCCCAATTTCCATTATCATATTCTTCGAGTACTGCACCACCAACTTCAGCAACACCAACCCATTTTTCCAAAGAAAACAGTGCTTCCTGGCATACAGAGTCCCTGCCAAGTTTTCTGGATTTTCCTGCACATGACTCAATGGACGATAATAGGGTAGAAAGTAGTGATTGCCCTATAATGGCATCCGAGGAGTATTCTAAGCAAAATGATTGGCAGGAGTGGGCTGAGCGGCTAATCAGTGATGATGACACTTTGACTTCTAATTGGGATGACCTTCTCACTGACAACATTCGAGACATTGAGCCAAAGGTGCCATTCCAGGTTGCAAAACCACTTTCACAGTTTCCAGGACATCAATCCCAAGGTCTACAACAACTTCCTGCTTCATATGGAGACAATTGCTCTGGAGCTACCCTCTCCTCCTCAGCAAATTCTACTCCTGCCAAGTCACGAATGCGTTGGACACCAGAACTTCACGAGGCGTTTGTGGAGGCTGTCAACCAACTTGGGGGAAGTGAAAGAGCTACTCCAAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTGAAAAGCCATTTGCAGAAATACAGGACAGCTAGATATAGACCGGAGTCATCTGAAGGAGTTGCGGAGAAAAAAGCAGGTTCCATTGAAGAGATGTCATCTCTAGATTTAAAAACTGGTATTGAGATCACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGGTGTGA 1101 0.4251 MEAHPTFSIERSKQLNSMGMSGALSSSLSILPIPTEDMYPRLPESQLDIVDQELMTRPYTHSSYLNSNGVVGHIFSSSSANSIDLHHSSLSPDEKNSSNAHFISQSSTNIAQFPLSYSSSTAPPTSATPTHFSKENSASWHTESLPSFLDFPAHDSMDDNRVESSDCPIMASEEYSKQNDWQEWAERLISDDDTLTSNWDDLLTDNIRDIEPKVPFQVAKPLSQFPGHQSQGLQQLPASYGDNCSGATLSSSANSTPAKSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVAEKKAGSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15413g00013 366 Pfam Myb-like DNA-binding domain 261 312 IPR001005 -
Vium15413g00013 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 316 IPR017930 -
Vium15413g00013 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 241 366 IPR044848 GO:0003700
Vium15413g00013 366 NCBIfam myb-like DNA-binding domain, SHAQKYF class 259 313 IPR006447 GO:0003677
Vium15413g00013 366 MobiDBLite consensus disorder prediction 115 135 - -
Vium15413g00013 366 FunFam Myb family transcription factor 258 316 - -
Vium15413g00013 366 Gene3D - 258 317 - -
Vium15413g00013 366 Pfam MYB-CC type transfactor, LHEQLE motif 344 366 IPR025756 -
Vium15413g00013 366 SUPERFAMILY Homeodomain-like 256 313 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15413g00013 Vium-Chr15413 82436 87417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15413g00013 32 366 G2-like Transcription Factor Family AT4G28610 47.093 4.10e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium15413g00013 Myb_DNA-binding 6.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15413g00013 - - vum:124823159 705.286