Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15413g00012 ATGACAAATAGTCTGGTTTGGGTATCAAAAACAAAAATCAAGAAAATAATGGAAGCACATCCTACTTTCTCCATTGAAAGATCAAAGCAACTCAATAGCATGGGGATGTCTGGAGCACTTTCTTCATCTTTGTCAATCCTTCCAATACCCACAGAAGATATGTATCCTAGGCTGCCTGAATCACAATTGGATATTGTAGATCAAGAACTTATGACAAGACCTTATACTCATTCAAGTTATTTGAATTCCAACGGAGTAGTTGGGCATATTTTTTCGTCTTCCTCTGCAAATTCAATTGACCTTCATCACTCATCTCTTTCACCTGATGAAAAAAACTCTTCTAACGCTCATTTTATTTCACAATCATCAACCAACATTGCCCAATTTCCATTATCATATTCTTCGAGTACTGCACCACCAACTTCAGCAACACCAACCCATTTTTCCAAAGAAAACAGTGCTTCCTGGCATACAGAGTCCCTGCCAAGTTTTCTGGATTTTCCTGCACATGACTCAATGGACGATAATAGGGTAGAAAGTAGTGATTGCCCTATAATGGCATCCGAGGAGTATTCTAAGCAAAATGATTGGCAGGAGTGGGCTGAGCGGCTAATCAGTGATGATGACACTTTGACTTCTAATTGGGATGACCTTCTCACTGACAACATTCGAGACATTGAGCCAAAGGTGCCATTCCAGGTTGCAAAACCACTTTCACAGTTTCCAGGACATCAATCCCAAGGTCTACAACAACTTCCTGCTTCATATGGAGACAATTGCTCTGGAGCTACCCTCTCCTCCTCAGCAAATTCTACTCCTGCCAAGTCACGAATGCGTTGGACACCAGAACTTCACGAGGCGTTTGTGGAGGCTGTCAACCAACTTGGGGGAAGTGAAAGAGCTACTCCAAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTGAAAAGCCATTTGCAGAAATACAGGACAGCTAGATATAGACCGGAGTCATCTGAAGGAGTTGCGGAGAAAAAAGCAGGTTCCATTGAAGAGATGTCATCTCTAGATTTAAAAACTGGTATTGAGATCACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGGTGTGA 1149 0.4186 MTNSLVWVSKTKIKKIMEAHPTFSIERSKQLNSMGMSGALSSSLSILPIPTEDMYPRLPESQLDIVDQELMTRPYTHSSYLNSNGVVGHIFSSSSANSIDLHHSSLSPDEKNSSNAHFISQSSTNIAQFPLSYSSSTAPPTSATPTHFSKENSASWHTESLPSFLDFPAHDSMDDNRVESSDCPIMASEEYSKQNDWQEWAERLISDDDTLTSNWDDLLTDNIRDIEPKVPFQVAKPLSQFPGHQSQGLQQLPASYGDNCSGATLSSSANSTPAKSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVAEKKAGSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15413g00012 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 257 382 IPR044848 GO:0003700
Vium15413g00012 382 Pfam Myb-like DNA-binding domain 277 328 IPR001005 -
Vium15413g00012 382 FunFam Myb family transcription factor 274 332 - -
Vium15413g00012 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 272 332 IPR017930 -
Vium15413g00012 382 SUPERFAMILY Homeodomain-like 272 329 IPR009057 -
Vium15413g00012 382 NCBIfam myb-like DNA-binding domain, SHAQKYF class 275 329 IPR006447 GO:0003677
Vium15413g00012 382 MobiDBLite consensus disorder prediction 131 151 - -
Vium15413g00012 382 Pfam MYB-CC type transfactor, LHEQLE motif 360 382 IPR025756 -
Vium15413g00012 382 Gene3D - 274 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15413g00012 Vium-Chr15413 82430 87418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15413g00012 48 382 G2-like Transcription Factor Family AT4G28610 47.093 4.86e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium15413g00012 Myb_DNA-binding 6.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15413g00012 - - vum:124823159 736.102