Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15413g00009 ATGGCACCCAATAAAAGAGTGGTAGCGGCCTATCGTGCAATGGGAAGTCTTGGAATTGATGAGTCGAAAGTGAAATCAGCGATAAAGAAACTCCTCAAAGTGTTTGACAAAAACTGGGAACTTATAGAGGCAGAGAACTATAGAGTTCTAGTAGATGCTATATTTGAGGAGGACGATAATATGGTACCCGAAGAGAAAAAGAAAGTCCGGTCTGACGATGTACATGACACTCATCATTCTTTGCCTTCATTTTCAAACAACCAAGAAGATGAGACAGAGTGTGAAGAGGCTCAGATGCATAATGAAAGAGCCCAACCTTTAAAAAGGCTGCGATTAAGGGGCCAGGACAGTCAGCCTTTGCATCCTCTGACTAACATTGCCACCAGCCCTCCTTCGAAAAGGCCTAAATTAGAAGATAATGCATTACACCAGGGTTCTTCTGGGAAGAAACCTCAAAACAAGCCAGAGTCATCTGATGGGAATCCAAGGATTGAAGCACCGTTACTTAGACCACCAGATGACATTGTTGATAAGGGAAAGCAACCTGCATCAGCCCAAGTTTTGCAAAGAGGAAGAGAACTTACATCTGGAAGATCGTCCCCATCCACACCATCTAAAGAACGAACAGTTAAATCAGGGAAGTTTTTGATGCCAAACAACACAATACCTCGTCCGCTGGCACTTATCATACCCAAGGACGAGCCTATTGATGAAGTGCCTGATTATGGAATGCCCATTGCAGTGATTCATCCTGAACCATCACGCGTAAGGGACTCGTCATTCAGGAATGGTGTAGCTGGAAAGCATGTCAACCATGATACTGTGACATCATCAGCATGCAGAAATAGAGTCAGAGATGAAGATGTTCTTCCTACCTCAAATGAAGAAGCCACTTGTAATGTAGAGATAGCCTCATCAACTCTTGGAGAGGTAAAACTTTCTTTGAGCTGCAGCTCAGCACTTTGGGGATCAAATTTTCACATGCCTAGTCGAGATGAACTCATAGAAATGATGGAGGCGAAATGCCTGCGTTCATATAAAATTGCTGACCCAAATTTCTCTGTTATGAAACTGTTGATGGATGTATGCAATTGCATGTTGGAACTCAGAAACAATTCTAATAATGATCCAGAAGAAGGTTCTATAGGGACATCCAATGTTCATATGTCGAAGGAATCACAAGAACCTGACACACTGAGTGTGGAAAGAAACAAAGAATTGGACACCCTTTCTCATGTTTCAAATGGATCAATCAATGTTAATCCTTCTGCTGCATTGGTTTCTCCCCATAGTTTCCTTCCTCGTGCTGACCTGATTGGTCTGAATGATGCTGTCTTGGTTTCCAAGATGGACCAAAAAACAAATGATTTTTCGCAATGTAATGCAAATAAGGAGCTGGAAGATTCTATATCTCCAAATTCACATAGTTTAGTGATTGTTCCACAGCATCAGCTGACATCTGATGATGTAAGGTCTTTTTATAATGCTAATGACCTCACAAAAGGAGAAGAAAATGTTGAAATTCCTTGGGTGAATGAATATACTAACGATTTCCCAGCATCCTTTAACTACATACCCCAAAACCTTGTGTTCCAAGATGCTTATGTTAACATTTCTCTGTCACGTATTGGCAGTGAGGACTGTTGTTCAACTTGTATGGGCAATTGTGTCTTGTCACCTTGTGCTTGTGCAAATAAAACTGGTGGTGAATTTGCTTATAGTTCTCAAGGCCTACTGAGGGAAGAATTTTTGGAAGAGTGCATTGCCACTAGTCGCAATCCACAAAACCATTTCTTTTATTGCAAAATTTGCCCACTTGAAAGATCTAAGAATGATGGTGGTTTAGAACCTTGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGCTGGAGCAAATGTGGCTGTGGGAAACAGTGTGGAAATCGGATTATCCAGCGAGGAATAACTTGCAAATTGCAGGTGTTTTTCACTTCAGAAGGTAAAGGATGGGGTCTTCGTACCTTAGAGGACCTGCCTAAAGGTGCATTTGTATGTGAGTTTGTTGGAGAAATTTTATCTATTAAAGAGTTGCATGAGAGGAACATGAAATGTACTGGAAAAGGGAACCATACATACCCAGTTCTACTGGATGCAAATTGGGATTCAGGATCTATGAAGAACGAAGAAGCTCTATGCTTGGATTCAGCTTCGTTTGGCAACATTGCTAGGTTTATCAATCACAGATGTTTTGATGCAAACTTGGTTGAGATCCCAGTTGAAGTTGAGGATCCTGGTCATTATTACTACCATTTTGCTTTTTTTACTTCCAGAATATTAGCAGCACTTGAGGAGTTAACATGGGTGAGCAAGCTTGTTAGTGATTATGGCATTGACTTTGATGATCATGATCATCATATCAAGCTGTTCCAGTGCAGTTGTGGCAGTAAATTATGCAGGCATTTAAAGAGGTCAAACAGATCCAGCAGATCTGCGTCAATTTCCGGATGA 2490 0.4096 MAPNKRVVAAYRAMGSLGIDESKVKSAIKKLLKVFDKNWELIEAENYRVLVDAIFEEDDNMVPEEKKKVRSDDVHDTHHSLPSFSNNQEDETECEEAQMHNERAQPLKRLRLRGQDSQPLHPLTNIATSPPSKRPKLEDNALHQGSSGKKPQNKPESSDGNPRIEAPLLRPPDDIVDKGKQPASAQVLQRGRELTSGRSSPSTPSKERTVKSGKFLMPNNTIPRPLALIIPKDEPIDEVPDYGMPIAVIHPEPSRVRDSSFRNGVAGKHVNHDTVTSSACRNRVRDEDVLPTSNEEATCNVEIASSTLGEVKLSLSCSSALWGSNFHMPSRDELIEMMEAKCLRSYKIADPNFSVMKLLMDVCNCMLELRNNSNNDPEEGSIGTSNVHMSKESQEPDTLSVERNKELDTLSHVSNGSINVNPSAALVSPHSFLPRADLIGLNDAVLVSKMDQKTNDFSQCNANKELEDSISPNSHSLVIVPQHQLTSDDVRSFYNANDLTKGEENVEIPWVNEYTNDFPASFNYIPQNLVFQDAYVNISLSRIGSEDCCSTCMGNCVLSPCACANKTGGEFAYSSQGLLREEFLEECIATSRNPQNHFFYCKICPLERSKNDGGLEPCKGHLKRKFIKECWSKCGCGKQCGNRIIQRGITCKLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILSIKELHERNMKCTGKGNHTYPVLLDANWDSGSMKNEEALCLDSASFGNIARFINHRCFDANLVEIPVEVEDPGHYYYHFAFFTSRILAALEELTWVSKLVSDYGIDFDDHDHHIKLFQCSCGSKLCRHLKRSNRSSRSASISG 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15413g00009 829 SUPERFAMILY SET domain 505 813 IPR046341 -
Vium15413g00009 829 Pfam Pre-SET motif 500 643 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium15413g00009 829 ProSiteProfiles Pre-SET domain profile. 548 648 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium15413g00009 829 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 824 - -
Vium15413g00009 829 Pfam Ubiquitin-binding WIYLD domain 4 60 IPR018848 -
Vium15413g00009 829 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 829 IPR025776 -
Vium15413g00009 829 SMART preset_2 496 635 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium15413g00009 829 MobiDBLite consensus disorder prediction 374 394 - -
Vium15413g00009 829 MobiDBLite consensus disorder prediction 145 159 - -
Vium15413g00009 829 ProSiteProfiles SET domain profile. 651 784 IPR001214 GO:0005515
Vium15413g00009 829 Gene3D SET domain 480 800 IPR046341 -
Vium15413g00009 829 CDD SET_SETDB-like 520 790 - -
Vium15413g00009 829 Gene3D - 1 60 IPR043017 -
Vium15413g00009 829 SMART set_7 651 796 IPR001214 GO:0005515
Vium15413g00009 829 MobiDBLite consensus disorder prediction 374 396 - -
Vium15413g00009 829 MobiDBLite consensus disorder prediction 188 209 - -
Vium15413g00009 829 Pfam SET domain 663 781 IPR001214 GO:0005515
Vium15413g00009 829 MobiDBLite consensus disorder prediction 115 210 - -
Vium15413g00009 829 MobiDBLite consensus disorder prediction 66 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15413g00009 Vium-Chr15413 25620 33287 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15413g00009 627 815 C2H2 Transcription Factor Family AT2G23740 39.175 3.04e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium15413g00009 Pre-SET 8.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15413g00009 - - vun:114190802 1524.22