Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15413g00008 ATGGCACCCAATAAAAGAGTGGTAGCGGCCTATCGTGCAATGGGAAGTCTTGGAATTGATGAGTCGAAAGTGAAATCAGCGATAAAGAAACTCCTCAAAGTGTTTGACAAAAACTGGGAACTTATAGAGGCAGAGAACTATAGAGTTCTAGTAGATGCTATATTTGAGGAGGACGATAATATGGTACCCGAAGAGAAAAAGAAAGTCCGGTCTGACGATGTACATGACACTCATCATTCTTTGCCTTCATTTTCAAACAACCAAGAAGATGAGACAGAGTGTGAAGAGGCTCAGATGCATAATGAAAGAGCCCAACCTTTAAAAAGGCTGCGATTAAGGGGCCAGGACAGTCAGCCTTTGCATCCTCTGACTAACATTGCCACCAGCCCTCCTTCGAAAAGGCCTAAATTAGAAGATAATGCATTACACCAGGGTTCTTCTGGGAAGAAACCTCAAAACAAGCCAGAGTCATCTGATGGGAATCCAAGGATTGAAGCACCGTTACTTAGACCACCAGATGACATTGTTGATAAGGGAAAGCAACCTGCATCAGCCCAAGTTTTGCAAAGAGGAAGAGAACTTACATCTGGAAGATCGTCCCCATCCACACCATCTAAAGAACGAACAGTTAAATCAGGGAAGTTTTTGATGCCAAACAACACAATACCTCGTCCGCTGGCACTTATCATACCCAAGGACGAGCCTATTGATGAAGTGCCTGATTATGGAATGCCCATTGCAGTGATTCATCCTGAACCATCACGCGTAAGGGACTCGTCATTCAGGAATGGTGTAGCTGGAAAGCATGTCAACCATGATACTGTGACATCATCAGCATGCAGAAATAGAGTCAGAGATGAAGATGTTCTTCCTACCTCAAATGAAGAAGCCACTTGTAATGTAGAGATAGCCTCATCAACTCTTGGAGAGGTAAAACTTTCTTTGAGCTGCAGCTCAGCACTTTGGGGATCAAATTTTCACATGCCTAGTCGAGATGAACTCATAGAAATGATGGAGGCGAAATGCCTGCGTTCATATAAAATTGCTGACCCAAATTTCTCTGTTATGAAACTGTTGATGGATGTATGCAATTGCATGTTGGAACTCAGAAACAATTCTAATAATGATCCAGAAGAAGGTTCTATAGGGACATCCAATGTTCATATGTCGAAGGAATCACAAGAACCTGACACACTGAGTGTGGAAAGAAACAAAGAATTGGACACCCTTTCTCATGTTTCAAATGGATCAATCAATGTTAATCCTTCTGCTGCATTGGTTTCTCCCCATAGTTTCCTTCCTCGTGCTGACCTGATTGGTCTGAATGATGCTGTCTTGGTTTCCAAGATGGACCAAAAAACAAATGATTTTTCGCAATGTAATGCAAATAAGGAGCTGGAAGATTCTATATCTCCAAATTCACATAGTTTAGTGATTGTTCCACAGCATCAGCTGACATCTGATGATGTAAGGTCTTTTTATAATGCTAATGACCTCACAAAAGGAGAAGAAAATGTTGAAATTCCTTGGGTGAATGAATATACTAACGATTTCCCAGCATCCTTTAACTACATACCCCAAAACCTTGTGTTCCAAGATGCTTATGTTAACATTTCTCTGTCACGTATTGGCAGTGAGGACTGTTGTTCAACTTGTATGGGCAATTGTGTCTTGTCACCTTGTGCTTGTGCAAATAAAACTGGTGGTGAATTTGCTTATAGTTCTCAAGGCCTACTGAGGGAAGAATTTTTGGAAGAGTGCATTGCCACTAGTCGCAATCCACAAAACCATTTCTTTTATTGCAAAATTTGCCCACTTGAAAGATCTAAGAATGATGGTGGTTTAGAACCTTGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGCTGGAGCAAATGTGGCTGTGGGAAACAGTGTGGAAATCGGATTATCCAGCGAGGAATAACTTGCAAATTGCAGGTGTTTTTCACTTCAGAAGGTAAAGGATGGGGTCTTCGTACCTTAGAGGACCTGCCTAAAGGTGCATTTGTATGTGAGTTTGTTGGAGAAATTTTATCTATTAAAGAGTTGCATGAGAGGAACATGAAATGTACTGGAAAAGGGAACCATACATACCCAGTTCTACTGGATGCAAATTGGGATTCAGGATCTATGAAGAACGAAGAAGCTCTATGCTTGGATTCAGCTTCGTTTGGCAACATTGCTAGGTTTATCAATCACAGATGTTTTGATGCAAACTTGGTTGAGATCCCAGTTGAAGTTGAGGATCCTGGTCATTATTACTACCATTTTGCTTTTTTTACTTCCAGAATATTAGCAGCACTTGAGGAGTTAACATGGGTGAGCAAGCTTGTTAGTGATTATGGCATTGACTTTGATGATCATGATCATCATATCAAGCTGTTCCAGTGCAGTTGTGGCAGTAAATTATGCAGGCATTTAAAGAGGTCAAACAGTACTGATTAA 2469 0.4079 MAPNKRVVAAYRAMGSLGIDESKVKSAIKKLLKVFDKNWELIEAENYRVLVDAIFEEDDNMVPEEKKKVRSDDVHDTHHSLPSFSNNQEDETECEEAQMHNERAQPLKRLRLRGQDSQPLHPLTNIATSPPSKRPKLEDNALHQGSSGKKPQNKPESSDGNPRIEAPLLRPPDDIVDKGKQPASAQVLQRGRELTSGRSSPSTPSKERTVKSGKFLMPNNTIPRPLALIIPKDEPIDEVPDYGMPIAVIHPEPSRVRDSSFRNGVAGKHVNHDTVTSSACRNRVRDEDVLPTSNEEATCNVEIASSTLGEVKLSLSCSSALWGSNFHMPSRDELIEMMEAKCLRSYKIADPNFSVMKLLMDVCNCMLELRNNSNNDPEEGSIGTSNVHMSKESQEPDTLSVERNKELDTLSHVSNGSINVNPSAALVSPHSFLPRADLIGLNDAVLVSKMDQKTNDFSQCNANKELEDSISPNSHSLVIVPQHQLTSDDVRSFYNANDLTKGEENVEIPWVNEYTNDFPASFNYIPQNLVFQDAYVNISLSRIGSEDCCSTCMGNCVLSPCACANKTGGEFAYSSQGLLREEFLEECIATSRNPQNHFFYCKICPLERSKNDGGLEPCKGHLKRKFIKECWSKCGCGKQCGNRIIQRGITCKLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILSIKELHERNMKCTGKGNHTYPVLLDANWDSGSMKNEEALCLDSASFGNIARFINHRCFDANLVEIPVEVEDPGHYYYHFAFFTSRILAALEELTWVSKLVSDYGIDFDDHDHHIKLFQCSCGSKLCRHLKRSNSTD 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15413g00008 822 SUPERFAMILY SET domain 505 813 IPR046341 -
Vium15413g00008 822 Pfam Pre-SET motif 500 643 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium15413g00008 822 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 820 - -
Vium15413g00008 822 ProSiteProfiles Pre-SET domain profile. 548 648 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium15413g00008 822 SMART preset_2 496 635 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium15413g00008 822 MobiDBLite consensus disorder prediction 374 394 - -
Vium15413g00008 822 MobiDBLite consensus disorder prediction 145 159 - -
Vium15413g00008 822 Pfam Ubiquitin-binding WIYLD domain 4 60 IPR018848 -
Vium15413g00008 822 Gene3D - 1 60 IPR043017 -
Vium15413g00008 822 ProSiteProfiles SET domain profile. 651 784 IPR001214 GO:0005515
Vium15413g00008 822 CDD SET_SETDB-like 520 790 - -
Vium15413g00008 822 SMART set_7 651 796 IPR001214 GO:0005515
Vium15413g00008 822 MobiDBLite consensus disorder prediction 374 396 - -
Vium15413g00008 822 Gene3D SET domain 480 800 IPR046341 -
Vium15413g00008 822 MobiDBLite consensus disorder prediction 188 209 - -
Vium15413g00008 822 Pfam SET domain 663 781 IPR001214 GO:0005515
Vium15413g00008 822 MobiDBLite consensus disorder prediction 115 210 - -
Vium15413g00008 822 MobiDBLite consensus disorder prediction 66 101 - -
Vium15413g00008 822 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 818 IPR025776 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15413g00008 Vium-Chr15413 25351 32928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15413g00008 627 815 C2H2 Transcription Factor Family AT2G23740 39.175 2.77e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium15413g00008 Pre-SET 8.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15413g00008 - - vun:114190802 1530