Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15412g00004 TTTCGTTGTGAGAGTGGGGTGTATGTGCCTTGCACCAACCAAGTTCTCACTCACCTTCTACTACAACGTCTTTTTCCTTCGTCTTCGTCTTCCATCCTCCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGATATTATTTGTTGGTAAAATCTATTCAAGAACTCCGAGAGAAAAAGGATGGCCTTGTTACTGTTGGCATTGGTGGTCCAAGTGGATCTGGTAAAACAAGCTTAGCAGAAAAGGTGGCATCTGTTATTGGTTGTACCGTTATATCAATGGGGAATTACCGTCATGGGGATGATGAAGGGAATGATGTGGATTCTATAGATTTTGATACGCTGATCAAGAATCTTGAGGATTTGACTAAAGGCAAGGATACATTAATCCCAAAGTTTGACTATCAGAAAAAGAAGCGTGTGGGCTATAAAGCAATAAAGAGCGCTTCATCTGGGGTGGTAATAGTTGATGGCACATATGCATTGCATGCAAAACTGCGGTCTTTACTGGACATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCTTGCTTTCTAAAGTTCGCTATGACATTGGAGATTCTTGTTCACTGGATTACCTCATAGATAGCATTTTTCCACTGTTTAGGAAACACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTCAGAGAGGCAATATACAAGGTTAAATGCATAAGTGAGTCTACAGATGGACATTCAGGTTCAGCTTTTCAAGGAAATGATGCCCAAACAGACAATTTTATTGAAATGTACCTTAGACCACCTTCATCTAGCGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATCTATCACTTGGTGACCAGAGGATTGTCGACAAGAATTTCATTATCAGGCCTAAAGCTGAATTTGAGGTTGGTCGAATGACATTGGGTGGGCTGTTGGCTCTTGGGTATACTGTTGTGGTTAGTTATAAGCGTGCATCGGCAATTGTCAATAATGGCAAGGTTAACATCTCTTTTGAGACCATTGATGTTCTTGGTGAGACGTTTATGGTGATGAGAGGAACTAATAGAAAGACTGTCGGAACAGAAGCATCAAGGATGGGTATTGATGGACCTTGGATTACCAAATCATATCTGGAAATGATTCTGGAGAGAAAAGGTGTACCTCGTCTTAGTACTCCACCACTTGTGTCTAATACTACTGTGGCTGCTAGTCAAGAAACAGCAATCATTGCCCCAAAGCCAATCCGTGTTACTCCTAGTGTTGTTACTGGGTTTGAGGATTTACCCCAGCCATGGACTCGATCGCCAACAAAATCTAAAATGGAACCTGTTGTGGCTGCATGGCATTTCATATCTTCAGATTCCTCCCAGCCTGACAATTCAGTTCTAGATCCTTCATCTTTCAGGGATAGTATTAGGCTTGCTCCAATGCCTGATTCATTTGACTTGGACAGGGGATTGCTTTTGGCTGTTCAAGCAATACAAGCATTGTTGGAGAATAAAGGTGTTCCGGTCATAGTTGGAATTGGAGGTCCAAGTGGGTCTGGGAAGACTAGTTTGGCTCATAAAATGGCAAATATAATTGGTTGTGAAGTAGTTTCCCTGGAAAGCTATTATAAACAAGTAAAGGACTTTAAATATGACGACTTCAGCGCACTTGATTTATCTTTGCTATCGAAGAACATTGATGACATAAGAAATGGCCAAAGAACAAAAGTACCTATATTTGATTTGGAAAGTGGTGCTCGGAATGGTTTCAAGGATCTTGAGGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGCGTCTTTGCTTTGCATCCTGATATCCGAATATCACTTGACTTGTGGATTGCTGTTGTTGGAGGTGTTCATTCACATTTGATTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGATGCTTTATTTCTCAAAATGAGATCATGATGACAGTGTTTCCCATGTTCCAGCAGCTTATTGAACCTCATCTTGTTCATGCACATCTTAAAATTCGAAATGATTTTGACCCTGTGCTTTCTCCTGAGAGTTCATTATTTGTATTAAAGAGTAACAAAAAAGTAGCATATCAAGATATTGTTGCAATTCTTGATTCAGCAAAATTTTGCAGTTCGGTGCAGAAATTTATTGACATCTATATTAGGCTTCCTGGGATCCCTTCTAATGGACAGTTGAGGGACAGTGATTGTATTCGAGTCAGAATATGTGAAGGCAGATTTGCGTTGCTGATACGAGAGCCCATCAAAGAAGGGAACTTTATTATTCAGCCCAAAGTGGATTTTGATATTAGCATTAGTACGGTTGCTGGCCTTCTTAATCTTGGGTATCAAGCAGTAGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTTTAATTGAGGTTGATCACCTTCAAGATGTACCTGGCCCATACATTCAGATAAAGGGTGTTAATAAAGATGCAGTAGCCACAGCTGGTTCAATGCTTAAATTGGATACTTCATATACGACTAAGAGTTATCTTGAAATAATTTTGGAAAGACTACCAACGATTGAAAGAACTTCTGGTGGGATTCATTCTCAACAATCAGCAAGGCTGCTAGAGATTGTTGAATTTATTCAATCTCAGGGGAGTAGCTCTGCTTCAGAATCCTCATCAGGTAGAGTAGTCTCTCCTATTGAAGGAGTTATTGAGGAGATGCAATCAAGGATTAGAAGGCTTGAAAAGTGGCTAGCGATAAATACGGTTCTATGGACATTTCTGATGTCTGCCCTTGTTGGTTATTCACTGTATCAAAGGAGGCGTCAATAA 2862 0.4011 FRCESGVYVPCTNQVLTHLLLQRLFPSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMGNYRHGDDEGNDVDSIDFDTLIKNLEDLTKGKDTLIPKFDYQKKKRVGYKAIKSASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCISESTDGHSGSAFQGNDAQTDNFIEMYLRPPSSSEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASAIVNNGKVNISFETIDVLGETFMVMRGTNRKTVGTEASRMGIDGPWITKSYLEMILERKGVPRLSTPPLVSNTTVAASQETAIIAPKPIRVTPSVVTGFEDLPQPWTRSPTKSKMEPVVAAWHFISSDSSQPDNSVLDPSSFRDSIRLAPMPDSFDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQVKDFKYDDFSALDLSLLSKNIDDIRNGQRTKVPIFDLESGARNGFKDLEVSEDCGVIIFEGVFALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDIVAILDSAKFCSSVQKFIDIYIRLPGIPSNGQLRDSDCIRVRICEGRFALLIREPIKEGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGPYIQIKGVNKDAVATAGSMLKLDTSYTTKSYLEIILERLPTIERTSGGIHSQQSARLLEIVEFIQSQGSSSASESSSGRVVSPIEGVIEEMQSRIRRLEKWLAINTVLWTFLMSALVGYSLYQRRRQ 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15412g00004 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 688 IPR027417 -
Vium15412g00004 953 Gene3D - 517 694 IPR027417 -
Vium15412g00004 953 Gene3D - 64 243 IPR027417 -
Vium15412g00004 953 Gene3D - 703 865 - -
Vium15412g00004 953 Pfam Phosphoribulokinase / Uridine kinase family 107 224 IPR006083 GO:0005524|GO:0016301
Vium15412g00004 953 Pfam Phosphoribulokinase / Uridine kinase family 520 685 IPR006083 GO:0005524|GO:0016301
Vium15412g00004 953 CDD UMPK_like 65 227 - -
Vium15412g00004 953 PRINTS Uridine kinase signature 545 556 - -
Vium15412g00004 953 PRINTS Uridine kinase signature 518 535 - -
Vium15412g00004 953 PRINTS Uridine kinase signature 639 649 - -
Vium15412g00004 953 CDD UMPK_like 520 688 - -
Vium15412g00004 953 SUPERFAMILY CYTH-like phosphatases 713 860 IPR033469 -
Vium15412g00004 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 177 IPR027417 -
Vium15412g00004 953 PANTHER URIDINE KINASE 497 883 - -
Vium15412g00004 953 SMART AAA_5 62 212 IPR003593 GO:0016887
Vium15412g00004 953 SMART AAA_5 517 661 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15412g00004 Vium-Chr15412 25717 51462 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15412g00004 513 676 PRT Gene Family AT1G55810 27.528 4.74e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15412g00004 - - gmx:100778905 1679.07