Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15412g00001 ATGGACGTAGCAAGAGCACCATTGCGACGGATTTCGTTTGACGTAACATTAGAGGAAGGAAACCTCGGGTTTCATCAAAGGACACAAAGTGTTCCACCACCATACAGAGCAGCTTTAGAAGTTCTTCGCAAGGTCAAGGAAATTCTGTTCCCTGATGACCCTCTTCGCCAATTTAAGGGAGAACCTCTTCAGAGAAAACTAATCCTTGGTGCTCAATATTTATTCCCTTTGCTTCAATGGGTTCCTACTTACAACCTCAAACTCTTCAAATCTGACCTTATTTCTGGCCTCACAATTGCAAGTCTGGCCATCCCTCAGGTTAGCAAGAGTTCAAAAGAGGGAAATCAGCTACGCGAAGCCTTGCAAATCTTCATCCATTTTGGACTCTGTCTCAATGATCTTGCAGTAGGACCCGTTTCAATTGCCTCCCTCGTTGATAGGAATCCATGATGAATGAGAAGTTTCTCCCAATGCAGAAACGACCTCTTATTCATTAGCCTTGACTTCAACAGTCTTGCCTGGATTTTTCAATCAGCCCTTGGAATTCTAAGGCTTGGATTTATCATTGATTTTCTATCGAAGGCAATCCTTATTGGGTTCATGGGTGGATCAGCTGTAATTGTAGGTCTGCAACAGCTGAAGGGTCTTCTCGGAATCAAACATTTCACCAGCAAGATGGCCCTGGTTCCTGTTATGAGTTCCGTGTTTAATAACATCGACGAGTGGTCGTGGCAAACAATAGTGATGGCGATTTGCTTCTTGGTGTTTCTGCTGGGTGCAAGACACGTGAGCATAAAGAAACCAGAGTTATTCTGGGTCTCAGCTGGTGCTCCTCTTGTGTCTGTCATAATTTCTACTGCCCTGTCTTTTGCAATAAAGGCCTCAACATTGCGAAATTGCAAAGAGGTAGTAAATCCTCCTTCAGCAGATAAGCTACTCTTTCGAGGAGATCATCTGCCTCTGGCCATCAAAACTGGCCTTATTACTGGCATTTTATCCCTCACAGAAGGAATTGCAGTGGGAAGAACATTTGCTACCATGAGAAACTACAAAGTCGATGGAAATAAGGAAATGATGGCAATAGGATTCATGAATGTGGTTGGCTCCACAACATCCTGCTATGTTACAACAGGATCTTTCTCTCGCTCAGCTATCAATCACAACGCAGGTGCTAGAACAGCAATGTCCAACGTAGTAATGTCTGTGACAGTCTTAGTGACACTGTTGTTTCTGATGCCTTTGTTCCAATACACGCCAAATGTTATATTGGGTGCAATCATAATATCAGCTGTAATTGGCCTCATTGATATTCCTTCTGCTTATCTCATTTGGAAGGTAGACAAATTCGATTTCGTTGTGATGTTGGCAGCCTTCTTTGGTGTCATTTTTATCTCTGTCCAAATCGGCCTAGCTGTTTCAGTCGCATTATCAGTTTTAAGGATACTCCTGCAAATTACAAGGCCTAAAATAGTAATGTTGGGGAACATACCTGCGACAAACATATATAGAGATCTTCATCATTATAAGGAAGCCATAAGAGTACCTGGTTTTCTTATTTTAAGAATAAAGGCTCCCATCAACTTTGCAAACATCACATATCTCAACGAGAGAATATATCGGTGGGTAGAAGAAGAACAAGCTTCGATCAAAGAAAACGTCTGCCTTCAATTTCTCATTCTTGACATGTCAGCTGTGAGTACCATAGACACAAGTGGAGTCTCACTTTTCAAGGACTTGAAAAACGCATTGACAATGAAGGGTGTTTCGATTGTGTTGGTGAATCCTCTGGCTGAGGTGATTGATAAGCTGCAAAAATCAGATGATGCTAATGACTTCATTCGAGCAGAATACCTTTTCTTAACAGTTGGAGAGGCTGTAGCTTCACTTTCATCAACAATGAAGAGACAAACACCAACCGTGGAAGACGCAAGGTGGAATATACCATTGTGA 1950 0.4215 MDVARAPLRRISFDVTLEEGNLGFHQRTQSVPPPYRAALEVLRXKVKEILFPDDPLRQFKGEPLQRKLILGAQYLFPLLQWVPTYNLKLFKSDLISGLTIASLAIPQVSKSSKEGNQLREALQIFIHFGLCLNDLAVGPVSIASLVDRNPXXMRSFSQCRNDLLFISLDFNSLAWIFQSALGILRLGFIIDFLSKAILIGFMGGSAVIVGLQQLKGLLGIKHFTSKMALVPVMSSVFNNIDEWSWQTIVMAICFLVFLLGARHVSIKKPELFWVSAGAPLVSVIISTALSFAIKASTLRNCKEVVNPPSADKLLFRGDHLPLAIKTGLITGILSLTEGIAVGRTFATMRNYKVDGNKEMMAIGFMNVVGSTTSCYVTTGSFSRSAINHNAGARTAMSNVVMSVTVLVTLLFLMPLFQYTPNVILGAIIISAVIGLIDIPSAYLIWKVDKFDFVVMLAAFFGVIFISVQIGLAVSVALSVLRILLQITRPKIVMLGNIPATNIYRDLHHYKEAIRVPGFLILRIKAPINFANITYLNERIYRWVEEEQASIKENVCLQFLILDMSAVSTIDTSGVSLFKDLKNALTMKGVSIVLVNPLAEVIDKLQKSDDANDFIRAEYLFLTVGEAVASLSSTMKRQTPTVEDARWNIPL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15412g00001 650 SUPERFAMILY SpoIIaa-like 514 630 IPR036513 -
Vium15412g00001 650 CDD STAS_SulP_like_sulfate_transporter 509 623 - -
Vium15412g00001 650 FunFam Sulfate transporter 31 488 633 - -
Vium15412g00001 650 Pfam Sulfate permease family 131 457 IPR011547 GO:0016020
Vium15412g00001 650 Gene3D STAS domain 488 633 IPR036513 -
Vium15412g00001 650 NCBIfam sulfate permease 77 626 IPR001902 GO:0016020|GO:0055085
Vium15412g00001 650 ProSiteProfiles STAS domain profile. 508 630 IPR002645 -
Vium15412g00001 650 PANTHER SULFATE TRANSPORTER 45 631 IPR001902 GO:0016020|GO:0055085
Vium15412g00001 650 Pfam STAS domain 509 626 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15412g00001 Vium-Chr15412 7596 11415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15412g00001 33 635 Inorganic Solute Cotransporters AT3G15990 57.581 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15412g00001 K17471 - gmx:100779433 852.047