Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15411g00035 ATGGCTGGTGGTGTGAAAAAATACCCTCTCTTCTTCACAATCTTCGTTCCAGAGCAACACTCTCAAACTATGAAAGTTCCAAAGGTGTTTTTGAAGAAATTGAATGAAGACTTGTCGAGTAATGCAGTTCTCAGTAGCTCTTCTTCTGGTGACAAGTGGCAAGTAAGTGTTCTAAAGAAAGGAAACGAAGTGTATATGCAAAATGGTTGGCCTAAGTTTGTGACAGATAGTTCAATTGTGCTTCATGATGTACTGCTTTTTACATATCATGGAGAGAACTGTTTCCATGTTCAAATTTTTGATAAGAATGGAGTGGAGAGGTTATGCCTCAAAGAAACAACACAAGAAAAAAAAGATATGCCTTGCAGAAACAAAGGCTTTATTTTTACTGGTAGTGAGACAATGAAAACAGGGCAAAAACAAACTGCCACCCCAAGTTTGGCAAGGACAAAGAAGAAAAAAGAAAGACATTTTTCTCCTGGAAA 485 0.3753 MAGGVKKYPLFFTIFVPEQHSQTMKVPKVFLKKLNEDLSSNAVLSSSSSGDKWQVSVLKKGNEVYMQNGWPKFVTDSSIVLHDVLLFTYHGENCFHVQIFDKNGVERLCLKETTQEKKDMPCRNKGFIFTGSETMKTGQKQTATPSLARTKKKKERHFSPG 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15411g00035 161 PANTHER B3 DOMAIN-CONTAINING 5 125 - -
Vium15411g00035 161 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Vium15411g00035 161 SMART B3_2 11 103 IPR003340 GO:0003677
Vium15411g00035 161 MobiDBLite consensus disorder prediction 134 161 - -
Vium15411g00035 161 CDD B3_DNA 9 101 IPR003340 GO:0003677
Vium15411g00035 161 Gene3D - 4 105 IPR015300 -
Vium15411g00035 161 Pfam B3 DNA binding domain 11 103 IPR003340 GO:0003677
Vium15411g00035 161 SUPERFAMILY DNA-binding pseudobarrel domain 7 104 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15411g00035 Vium-Chr15411 149454 150349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15411g00035 1 124 REM Transcription Factor Family AT3G53310 29.839 2.47e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium15411g00035 B3 6.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15411g00035 - - vum:124823150 329.717