Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15411g00034 ATGACAATGAGAGACTTTTCATTTTATCAAAAAGCTTTAATCGTACAAGGAAATGGCAGGGAGATGTGGCAGATGGACTATTATCGGGGCAATCCAGTCTTCTTTGTTATCATCAACAACTCCAAATTACAGAAAGTGCCAGAGGGATTTCTGAAGCATTTGAATGAAGACTTTCAAAATGCAGTTCTTATTGGTCCTTCTGGTGATAATTGGCAAGTGACTATTTTGAAGAAAGGAAATAACATTTATCTGTACAATGGTTGGCCACAGTTTCTGACCGACAATTCAGTGATGCTTGATGATTTCTTGCTTTTTACATATCATGGAGGAAACTGCTTCCATGTTCAAATTTTTGGTAAGAATGGATTGGAGAGGTTATGTTTCAAGCAAACAAGACAAGATCAAGTTCTGATTCCAAGTTTGGTGAGGACAAAGAAGAACACACACAGAAGAACTTCTTCCAGTCCATTCCTCCACCAAGCCAAGTCTTATAAAAAAGGTCTGTCTTTCAGCAGCAAATTCTCATTTTCAAAGCTCAAGAGTTCAGTTAAAATTGAAAGTTCAGAAGCATGCTACTTGGCAGATTCTTTTACCTCTCGCAACCCTCACTGGAAGCATCTCATGACTAAATGCAATGTAGAAGATCACTGCACACTGCCAATTGCTACTGAGTTTGCCAGGAAGCATATTCCTGAAACAGTGAAACAGATAATTCTTTGGAACACAGAAGGAAAATTTTGGGAAGTGGTAGTGACTTGGTTTGGATGTCAAAATAAGAGGTATACTCGATTTACAACAGGATGGGGAAGATTCGTTCGTGATAACAGACTTATGAGGGGTGACACTTGCATATTTGAACTTGAAGATCAAAACCATTTGAGTGTTCACATATTCAGAACAGGATTTTGTGCACCAAAATTGTTTTAA 927 0.3808 MTMRDFSFYQKALIVQGNGREMWQMDYYRGNPVFFVIINNSKLQKVPEGFLKHLNEDFQNAVLIGPSGDNWQVTILKKGNNIYLYNGWPQFLTDNSVMLDDFLLFTYHGGNCFHVQIFGKNGLERLCFKQTRQDQVLIPSLVRTKKNTHRRTSSSPFLHQAKSYKKGLSFSSKFSFSKLKSSVKIESSEACYLADSFTSRNPHWKHLMTKCNVEDHCTLPIATEFARKHIPETVKQIILWNTEGKFWEVVVTWFGCQNKRYTRFTTGWGRFVRDNRLMRGDTCIFELEDQNHLSVHIFRTGFCAPKLF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15411g00034 308 ProSiteProfiles B3 DNA-binding domain profile. 29 121 IPR003340 GO:0003677
Vium15411g00034 308 Gene3D - 183 301 IPR015300 -
Vium15411g00034 308 Pfam B3 DNA binding domain 45 120 IPR003340 GO:0003677
Vium15411g00034 308 Pfam B3 DNA binding domain 207 300 IPR003340 GO:0003677
Vium15411g00034 308 ProSiteProfiles B3 DNA-binding domain profile. 204 301 IPR003340 GO:0003677
Vium15411g00034 308 SUPERFAMILY DNA-binding pseudobarrel domain 199 303 IPR015300 -
Vium15411g00034 308 CDD B3_DNA 32 118 IPR003340 GO:0003677
Vium15411g00034 308 CDD B3_DNA 208 299 IPR003340 GO:0003677
Vium15411g00034 308 PANTHER B3 DOMAIN-CONTAINING 31 297 - -
Vium15411g00034 308 SUPERFAMILY DNA-binding pseudobarrel domain 29 122 IPR015300 -
Vium15411g00034 308 SMART B3_2 34 121 IPR003340 GO:0003677
Vium15411g00034 308 SMART B3_2 204 301 IPR003340 GO:0003677
Vium15411g00034 308 Gene3D - 11 122 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15411g00034 Vium-Chr15411 147408 148937 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15411g00034 31 297 B3 DNA Binding Superfamily AT5G18090 26.712 4.58e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium15411g00034 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15411g00034 - - vum:124823151 626.32