Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15411g00018 ATGGAAGATCATTTTTCCCCAAAGGGAAAGGAAACTGGCTATTGCACATCTCCTTGTACCCAGTTGGAGGAATCAACATCGGTTGATGGTGGGATGAAAAAATCTGCTTCAGAGGACATGTTTAGCAACTTCTCTGAGCTCATGAACTTTGATACCTATGCTGGTTGGAGCAATAGTTCATCTATGAATTATCAGAGTTTGGCAAGTGTGTTTTCATCATTTTCCTCAGCATCATATCCACCATCCGATGGATTGAATCTGGTGGAACATGGCAATGGTCCATGCTTTATGACAGAAGTCAGTGAAATTCACAATGGTATAGAAAGTTCTCCTAGTTGTGAAGAAAGAGGTATATTTCAGCAAATGGACATCCAACTTGGTTTCTTAGATGAAGCAAATGATTCAAATAGCTTTGATTCAAAACAAAATCGTAATGGTTTATATCAGCAACTTAATACCTCAGACATGTGCAATTACATGATCTCAAGGTCATCAGGGAGGCCACTTGCTGATAGAATGTTGAGGTCTTTGTCCTTCTTTATGGAATCAGTTGATGAGGGAATGCTGGCACAAGTTTGGGTACCTATAAAGCATGGTGATGAATTCATCTTATGCACAAGTGAACAACCTTATTTGTTAGATCCAAAGCTTGCAGGGTATCGAGAGGTGTCAAGGGCATTCACATTTTCTGCAGAAGGAAAGAAAGGATCATGTCCGGGGCTTCCTGCACGAGTGTTTACATCACATGTTCCTGAATGGACTTCCAATGTTGGCTACTATAATAAAACTGAGTACTTAAGGTTGGACCATGCATTGAATCATGAAATTCGTGGATCTATTGCTCTTCCTGTTTCTGATATGCATTCTCATGAGCCATGTGCTGTATTGGAACTGGTCACTACAAAGGAAAAACCTAATTTTGACAGAGAATTAGAAATTGTTACTCAGGCACTTCAGCTTGTAAATTTAAAGACTACTATGCCTCCACGACTTCTTCCCCAGTGTCTATCAAGTAACAAAAGAGCTGCTTTAACAGAGATAGTTGATGTGTTACGTGCGGTGTGTCACGCACATAGATTGCCACTAGCACTGACATGGATTCCCTGTTGCTACAGTGAGGGAATAGGAGATGAAGCTGAGAGAATACGAATCAAAGAAGGTCATACAAGTTCTGACGAAAAATGTGTGCTATGTATTGAGGAATCAGCTTGCTATATAAATGATGCAGCAATTGGAGGGTTTGTTCATGCATGCGTTGAACATCATCTTGAGGAAGGGCAAGGTATAGCAGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTACACTGATGTGAAGACATATGATATTAGTGAATACCCCCTTGTTCATCATGCACGCAAATATAACTTGAATGCTGCAGTTGCAATTCGGCTAAGGAGTACCTTTACCAATGATGATGATTACATATTAGAGTTCTTTCTGCCAGTGAACATGACAGGGAGTTCAGAACAACAACTTTTACTGGATAATCTCTCAGGTACCATGAGGAGAATTTGTAGGAGTTTGAGAACAGTTTCAGATACTGAAATAACAGGAATAGAAGGATCCGTAGCTGGGTTTCCAAAGGAAAAGCTCACATATTTTTTTCCCATGTCCAAAAGGAACTCTCAGATAGCATTTATAAATGATGATTATGATTCGAATCAGAAGATGTCCTTGAAGGCATCTAACAATGGAATTGAAGCTGCTCATGGCCAGGTAATGAATGGACCAAGAAAACAGATTGAGAAAAAGAGAAGTACAGTGGAGAAGAATGTTAGTTTGAGTGTTCTACAACAGTACTTCTCTGGTAGTCTGAAAGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCTCGGAAGATCAATAAAGTGAATCGTTCATTAAAGAAGATACAGACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCTTATACTGGGGGGTTTATAGCTGGAGGATCACTGATGCAAGAAATTGACACACATAAATACATTCTGTTTCCTGAGAAAAGTGCTGTGAAAGACCCTAAGCATGCAACACAAAAGCCAGTTTCAGCACCAGGCAGCACTAGTGAGAATTCAACAATTAAGTTGGATGATGATGATGATGGTGTTTGTTTGGTGGAAAACAAAATTGTAGACTCAAGAGGTGCACTTTTATCTAATACCAGTGAGGGAGGATTTAAAAAAGACAATGCTTCTTCTGATGATTGTTGTGAAGATTCAAAATCAGTGGCCATGAATGATGGATCAAGCCAGAAGGCCAAGAATCAGGATTGTCCTGAACAAACTTGTTCAATATCCTTGGTTACAGATGAGGCTGAAGTTGGAGTAGATGGGGGAGAAGGAATTGAAGAACATAACAACCTTATAAATTCTTCAAGCACCACAAACTCATCCAATGGCTCTGGCTCGATGATGCATGGCAGCTCATCATGCTCTCAAAGCTTTGAGAACCAAAAGCATTCAAAAGTAAAACCAACTTGTGTTGATAGTGAGTCAAAAATGATTGTGAAAGCTAGCTATAGGGGAGACACTATTCGTTTCAAGTTTGATCCATCCGCAGGTTGTTTCCAGCTATATGAAGAGGTTGCAACAAGGTTCAAACTCCAAAACGGGTTATTCAAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGAGAATGACTCAGATTTGCAAGAGTGTGTAGAAATTTTGCATGACATTGGCACACGTTGTGTGAAGTTTCTGGTTCGTGATGTGCCTTGTGTTTTAAGCAGTTGTGGCAGCAGCAATTGCTTCTTGCCAGACAGCTCACAGTGTCTGATATGA 2904 0.4019 MEDHFSPKGKETGYCTSPCTQLEESTSVDGGMKKSASEDMFSNFSELMNFDTYAGWSNSSSMNYQSLASVFSSFSSASYPPSDGLNLVEHGNGPCFMTEVSEIHNGIESSPSCEERGIFQQMDIQLGFLDEANDSNSFDSKQNRNGLYQQLNTSDMCNYMISRSSGRPLADRMLRSLSFFMESVDEGMLAQVWVPIKHGDEFILCTSEQPYLLDPKLAGYREVSRAFTFSAEGKKGSCPGLPARVFTSHVPEWTSNVGYYNKTEYLRLDHALNHEIRGSIALPVSDMHSHEPCAVLELVTTKEKPNFDRELEIVTQALQLVNLKTTMPPRLLPQCLSSNKRAALTEIVDVLRAVCHAHRLPLALTWIPCCYSEGIGDEAERIRIKEGHTSSDEKCVLCIEESACYINDAAIGGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTFTNDDDYILEFFLPVNMTGSSEQQLLLDNLSGTMRRICRSLRTVSDTEITGIEGSVAGFPKEKLTYFFPMSKRNSQIAFINDDYDSNQKMSLKASNNGIEAAHGQVMNGPRKQIEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGFIAGGSLMQEIDTHKYILFPEKSAVKDPKHATQKPVSAPGSTSENSTIKLDDDDDGVCLVENKIVDSRGALLSNTSEGGFKKDNASSDDCCEDSKSVAMNDGSSQKAKNQDCPEQTCSISLVTDEAEVGVDGGEGIEEHNNLINSSSTTNSSNGSGSMMHGSSSCSQSFENQKHSKVKPTCVDSESKMIVKASYRGDTIRFKFDPSAGCFQLYEEVATRFKLQNGLFKLKYLDDEEEWVMLENDSDLQECVEILHDIGTRCVKFLVRDVPCVLSSCGSSNCFLPDSSQCLI 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15411g00018 967 ProSiteProfiles RWP-RK domain profile. 579 667 IPR003035 -
Vium15411g00018 967 MobiDBLite consensus disorder prediction 815 847 - -
Vium15411g00018 967 SUPERFAMILY CAD & PB1 domains 858 947 - -
Vium15411g00018 967 MobiDBLite consensus disorder prediction 703 728 - -
Vium15411g00018 967 ProSiteProfiles PB1 domain profile. 863 945 IPR000270 GO:0005515
Vium15411g00018 967 MobiDBLite consensus disorder prediction 812 847 - -
Vium15411g00018 967 MobiDBLite consensus disorder prediction 767 786 - -
Vium15411g00018 967 Pfam PB1 domain 866 944 IPR000270 GO:0005515
Vium15411g00018 967 MobiDBLite consensus disorder prediction 749 786 - -
Vium15411g00018 967 PANTHER PROTEIN NLP8 136 956 IPR045012 GO:0003700
Vium15411g00018 967 SMART PB1_new 863 945 IPR000270 GO:0005515
Vium15411g00018 967 Gene3D - 859 942 - -
Vium15411g00018 967 Pfam RWP-RK domain 599 647 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15411g00018 Vium-Chr15411 72871 80588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15411g00018 1 959 NLP Transcription Factor Family AT2G43500 49.744 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vium15411g00018 PB1 2e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15411g00018 - - gmx:100793770 1572.76