Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15410g00008 ATGGAGTTTGTGGATAACAGAAAACTACAGTTACAACAACAACAACTGCAACAACAGCCGCAACCGCAGGAGCAACATTTTCATGTGTTGGCAGTGGACGACAGTGTCATAGATAGGAAGCTTTTGGAGAGGCTCCTAAGAGGTTCTTCATGCAAAGTCACCTGCGTGGACTCCGGAGACAAGGCTTTGAAATATCTCGGGTTGGTTGATGACCTTCATGATACTACTTCTTCAACCTCTTTAGAATCATCATCTCCTCCTCCACCTCAACCGTTGCAGCAAGAGGGAATCAAAGTGAATTTGATCATGACAGACTATTGCATGCCTGGGATGAGTGGCTATGATTTACTCAAACGAGTCAAGGGATCTTCTTGGAAAGATGTTCCCGTCGTGATTATGTCATCAGAAAATGTACCTTCCAGAATCAGCATGTGCTTGGAAGGAGGGGCAGAAGAGTTTCTGCTGAAGCCTCTTCAGTTATCAGATTTGGACAAGCTTCAGTCATACTTTCTGAAATCCCTTGAAAACTCTTGTGAAAAAGAATCTGCTAACAGTTGCATAGACTCGGAGAATGAGAATGTCATCATTAACATTAGTAACCATAACAGTAACAGTATTAGCAAAAGGAAGGCCATATCTCCGGACTCTCATCAGGAGAGATCAAGACCCAAAATGAAGGAGTTGGCTGTGGTGTAA 696 0.4325 MEFVDNRKLQLQQQQLQQQPQPQEQHFHVLAVDDSVIDRKLLERLLRGSSCKVTCVDSGDKALKYLGLVDDLHDTTSSTSLESSSPPPPQPLQQEGIKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVIMSSENVPSRISMCLEGGAEEFLLKPLQLSDLDKLQSYFLKSLENSCEKESANSCIDSENENVIINISNHNSNSISKRKAISPDSHQERSRPKMKELAVV 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15410g00008 231 SMART REC_2 27 167 IPR001789 GO:0000160
Vium15410g00008 231 SUPERFAMILY CheY-like 27 176 IPR011006 -
Vium15410g00008 231 ProSiteProfiles Response regulatory domain profile. 28 171 IPR001789 GO:0000160
Vium15410g00008 231 MobiDBLite consensus disorder prediction 212 231 - -
Vium15410g00008 231 MobiDBLite consensus disorder prediction 7 23 - -
Vium15410g00008 231 MobiDBLite consensus disorder prediction 206 231 - -
Vium15410g00008 231 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 209 IPR045279 GO:0009736
Vium15410g00008 231 MobiDBLite consensus disorder prediction 1 23 - -
Vium15410g00008 231 CDD REC_typeA_ARR 29 166 - -
Vium15410g00008 231 Gene3D - 28 226 - -
Vium15410g00008 231 Pfam Response regulator receiver domain 98 164 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15410g00008 Vium-Chr15410 112833 115525 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15410g00008 24 173 Response Regulator Gene Family AT3G57040 59.603 1.54e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium15410g00008 Response_reg 3.3e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15410g00008 K14492 - gmx:100786187 329.331