Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15410g00003 ATGGCAGAGCGTGTGTTCCTCACTCCTTCGTCACCGCCTTTACCATCTCAACACACTCCAACCGCAATGGCTCTTTTCAGCGGCGCCGCCTCCGCTCGCATCATTCCCTCCGTCTCACTCTCCTCTTCTCGCTCCTTCTTCTCTATCTCGTCCTCTTCTTCCTCACTTCAGTGCTTGCGCTCTTCTCCTCGCATTTCGCACCTGTTTCTCAATCAGCGGAGAGTGGAGGTTCGCGTTTCGAGTGGAGGATACGGAACGGTGTCGGCGCCGAAGTCCTTCGCGTCTGATCCTGATCAGTTGAAGGGCGCTAGAGAAGATATCAAGGAGCTTCTCAGGTCAAAGTTCTGTCATCCTATTCTGATTCGTTTGGGGTGGCATGATGCTGGTACTTACAATAAGAATATTGAGGAATGGCCACAAAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAATTGAGCTGAAACATGGAGCCAATGCTGGACTCGTAAATGCATTGAAGCTTCTTCAGCCGATCAAAGACAAATACTCTGGTGTGACATATGCAGACTTATTTCAGTTGGCTGGTGCCACAGCTGTGGAGGAAGCTGGAGGCCCAAAACTCCCAATGAAATATGGAAGAGTGGATGTATCTGGACCTGAACAATGTCCCGAAGAAGGGAGACTTCCTGATGCTGGTCCCCCTTCACCTGCTGATCATTTGCGTCAAGTTTTCTACCGAATGGGTTTGAATGACAAGGAAATTGTTGCATTATCTGGTGCACACACACTGGGGAGGTCTAGACCAGATCGTAGTGGTTGGGGAAAGCCTGAGACTAAATATACAAAAGATGGACCAGGAGCACCTGGAGGACAATCATGGACAGTGCAATGGTTGAAATTTGACAACTCTTACTTCAAGGACATCAAAGAAAAAAAGGATGAAGATCTATTGGTATTGCCAACTGATGCTGCTCTTTTTGAAGACCCATCCTTCAAGGTATATGCTGAGAAGTATGCTGAAGATCAGGAAGCATTCTTTAAAGATTATGCTGAAGCCCATGCGAAACTTAGCAACCTTGGAGCCAAATTTGATCCTCCAGAGGGCGTTGTGATAGATGAATCCCCAAATGCAGGGGCAGAGAAGTTCGTAGCAGCCAAATACTCCACTGGAAAGAGAGAGCTGTCTGAAGCAATGAAGCAGAAGATACGGGCTGAATATGAGGCCGTTGGTGGAAGCCCAGATAAGCCTCTACAGTCAAACTATTTTCTAAATATCATGATTATTATTGCAGTTTTGGCACTTTTGACATCACTTCTTGGAAACTAG 1308 0.4679 MAERVFLTPSSPPLPSQHTPTAMALFSGAASARIIPSVSLSSSRSFFSISSSSSSLQCLRSSPRISHLFLNQRRVEVRVSSGGYGTVSAPKSFASDPDQLKGAREDIKELLRSKFCHPILIRLGWHDAGTYNKNIEEWPQRGGANGSLRFEIELKHGANAGLVNALKLLQPIKDKYSGVTYADLFQLAGATAVEEAGGPKLPMKYGRVDVSGPEQCPEEGRLPDAGPPSPADHLRQVFYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKEKKDEDLLVLPTDAALFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLGAKFDPPEGVVIDESPNAGAEKFVAAKYSTGKRELSEAMKQKIRAEYEAVGGSPDKPLQSNYFLNIMIIIAVLALLTSLLGN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15410g00003 435 PRINTS Haem peroxidase superfamily signature 287 302 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium15410g00003 435 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium15410g00003 435 PRINTS Haem peroxidase superfamily signature 179 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium15410g00003 435 PRINTS Haem peroxidase superfamily signature 197 209 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium15410g00003 435 PRINTS Haem peroxidase superfamily signature 117 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium15410g00003 435 Gene3D - 103 356 - -
Vium15410g00003 435 ProSiteProfiles Plant heme peroxidase family profile. 179 404 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium15410g00003 435 FunFam L-ascorbate peroxidase S chloroplastic/mitochondrial 103 227 - -
Vium15410g00003 435 MobiDBLite consensus disorder prediction 254 286 - -
Vium15410g00003 435 ProSitePatterns Peroxidases proximal heme-ligand signature. 247 257 IPR019793 -
Vium15410g00003 435 Pfam Peroxidase 104 335 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium15410g00003 435 PRINTS Plant ascorbate peroxidase signature 178 196 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium15410g00003 435 PRINTS Plant ascorbate peroxidase signature 117 132 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium15410g00003 435 PRINTS Plant ascorbate peroxidase signature 96 116 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium15410g00003 435 PRINTS Plant ascorbate peroxidase signature 197 209 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium15410g00003 435 PRINTS Plant ascorbate peroxidase signature 316 340 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium15410g00003 435 SUPERFAMILY Heme-dependent peroxidases 97 356 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium15410g00003 435 Gene3D Peroxidase, domain 2 225 348 - -
Vium15410g00003 435 FunFam L-ascorbate peroxidase T, chloroplastic 225 348 - -
Vium15410g00003 435 CDD ascorbate_peroxidase 88 358 - -
Vium15410g00003 435 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 87 358 IPR044831 GO:0004601|GO:0034599
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15410g00003 Vium-Chr15410 28101 34980 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15410g00003 104 353 Peroxidase AT2G22420 27.338 8.34e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15410g00003 K00434 - qsa:O6P43_015163 694.886