Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15409g00002 ATGTTGAATTTCTGTGGCTCTTATTCATTTATCCGGGTTTTGTTTTCCTTTGTCTCTTGGTTATTTGGAGGACTGAAAGGTGCAGAGGAAAAACCTACGACTGACAACAATGATCCTACGATTGACAACAATGATCCTCAGATCAAGCATGATGTTTTTGTTAGCTTCAGAGGCAAGGATGTCCATCGCGGCTTTCTTAGCCATTTGACTGAAGCTTTTCAAAGGAGAAACATAGATGCCTTTGTAGCTGATAACAATCTAGAGAAGGGAGAAGAAATATGGCCATCACTTGTTGAAGCAATTGAAGGATCATCCATTTCATTGGTCATATTCTCACAAAACTATGCTTCTTCTCGTTGGTGTTTAGAAGAACTCGTGACAATACTTGAATGTAGAGAGAAATATGGAACTTATGTTTTACCTGTTTTCTACTATGTAGAACCCACATATGTACGACATCAATCCGAGGTGCAACGCTGGAGACGTGCTTTGAATTTGGCTTCTTGTTTAGCGGGAATTAACTCATCAAAATTTTCGGGTGATGCTGAACTAGTTAAGGAAATTGTCAATGAAGTGCTCAAGAGATTGGTTAAACAGTCAATTAACACAAAAGGGCTCGTTGGAATTGATGAAAAAATTGCAGCTATAGAATCACTGATGACAGAGGAGCCAAAGCAAACCAGACTTATTGGAATTTGGGGTATGGGAGGTATTGGCAAGACAACTCTTGCAGAAGAAGTATTTAATAAACTACAATCTGAATATGAAGGTTCCTATTTTGCAGCCAGTGAAACAGATCGATCAAACAAACACGAGCTAATTTCCTTGAAGGAAAAAATGTTTTCTAAGCTATTAGGATATGATGTCAAAATCGATACACCAAATTCATTGCCCAAAGGTATTGTCAGGAGAATTGGTTGTATGAAGGTTCTTATTGTTCTTGATGGTGTGAATGAGTCCGAACAGCTGGAAAAACTGCTGGGAACTCTCGATAATTTTGGATCAGGTAGTAGAATAATTGTAACAACTAGAGATGAACAAGTGCTGAGGGCTAACAAAGCAGATAAGATATACCAGCTTAAAGAATTCAATTTTGACAAAGCCCTTGAACTTTTCCATTTGAATGCCTTTAAAACAAATGATCGTGTGCAGGAATACAAAGAGCTTTCTAAAAGGGTGGTTGATTATGCCCAAGGCATTCCATTGGTTGTGAAAGTTTTGGCTGGTCTTCTTCATGGAAAAAATAAGGAAGAATGGGAAAGTATGTTGGGAAAGCTTAAGAAAATGCCTCCTAAAAAAGTTTATAAAGTAATGAAACTGAGTTATGATAGTCTAGATCGCAAAGGGAAACAAATATTTCTTGATCTTGCATGTTTCTTTCTCAGAACTCATGTAGCTGTGAATGTGGATTATCTGAAGTCTTTATTGAAAGATGATGACAGTGATAATTCTGTGGCTTTTGAGTTGGGAAGGTTGAAAGACAAAGCTCTCATAACTATATCTGATGATAATACTGTATCTATACATGATAGTTTACAAGAAATGGCGTGGGAGATTGTTCGCCAAGAGTCTGTTGAGCACCCTGGAAATCGCAGTCGGTTGTGGGAACTAAATGACATTTGTGAAGCATTGAAAAATGACAAGGTTAAAGAGGCTATTAGAAGTATAAGAATTCACTTGCCAACAATTAAGGAGCAAAAGTTAGTGCCTCAAATTCTGGAAATTAATATGAGCAAACTGGAAGTTTTTGTATGTGGTCGCTATGATGAACTTACTCTTCTTAAAGGGCCACAATTTTTGGCAACTGAGCTAAGATTTCTTTCTTGGTATCAATACCCTCTGAAATCATTGCCAGAGAATTTTTCTGCAGAGAAACTTGTAATATTGAAGTTGAGAAATGGAAGAATGGAAAAACTTTGGGATGGAGTGAAGAATATGGTGAATTTAAAACAAGTTGACCTTAGTCGATCACAAAATTTAAAGAAGCTACCAGATCTATCAAAAGCCACAAATCTAGAAGTCCTTCTTCTTATGAGTTGTTCTTCGTTGACTAGTGTTCATCCATCTATTTACTCTCTGCCCAAACTTGTGAAATTGGACCTTCTTTGTTGCACATCTCTCACCACACTCGGTAGCAGCAATTTTAATCAACTGCTACACCTTGACATAAGCTTTTGCAGCAAGCTTCGAACTATTCCAAAGCTTCCCCTATCACTTGAAACTCTGAATGCCAGAGAATGCCAATCTTTGAAGACTATATTGTTTCCTTCACCGGCTGTCGAACAATTAAAGGAGAACAGGAAAGGCATTCTGTTCTGGAAATGCACGAACTTGGATAATCAGACTCTGGAGGCTATTGGGTTGAATGTTCGAATGAATGTGATGAATTATGCAAACCAGAACATATCCACACCATGTCACAATCATGTTGAACATTGTGATGATGACAATTGTGATTCTTATTCAGGTGTTTATGTGTATCCAGGAATTAGAGTTCCAAAGTGGTTGGAATATAAGACAAGAAAGGATTCTATAATTATTGATCTCTCTTCTGCTCCACCTTCCCTTCTCATTGGCTTTATTTTCTGCTTTGTTCTTGGTAAGTACAATAACACAGATGTTGATAGATTTGAAGTGATGATCACTATTGATGGCGAGGACGAAGGTAAAAATATCAGTGTTCCGATTTACATAGATTATGGCTATGAGAAAACTGAATCAGATCACGTGTGTGTGATGTATGAACAAAGATGTTCTACCTTCTTAAACAACAGAGCCAAAAACCAAACAAGGTTTAAAATCCAGGTTACAGTGGAAGAAGCACTCTCACACAAGTTTTTGAAAGGATTTGGCGTTAGCCTTATAAACCGCTCAACATATAAAAAATTCATTCAGGAAATGCAATTGCGAGAGTCACAGTATCAATTTCGTTAA 2934 0.3736 MLNFCGSYSFIRVLFSFVSWLFGGLKGAEEKPTTDNNDPTIDNNDPQIKHDVFVSFRGKDVHRGFLSHLTEAFQRRNIDAFVADNNLEKGEEIWPSLVEAIEGSSISLVIFSQNYASSRWCLEELVTILECREKYGTYVLPVFYYVEPTYVRHQSEVQRWRRALNLASCLAGINSSKFSGDAELVKEIVNEVLKRLVKQSINTKGLVGIDEKIAAIESLMTEEPKQTRLIGIWGMGGIGKTTLAEEVFNKLQSEYEGSYFAASETDRSNKHELISLKEKMFSKLLGYDVKIDTPNSLPKGIVRRIGCMKVLIVLDGVNESEQLEKLLGTLDNFGSGSRIIVTTRDEQVLRANKADKIYQLKEFNFDKALELFHLNAFKTNDRVQEYKELSKRVVDYAQGIPLVVKVLAGLLHGKNKEEWESMLGKLKKMPPKKVYKVMKLSYDSLDRKGKQIFLDLACFFLRTHVAVNVDYLKSLLKDDDSDNSVAFELGRLKDKALITISDDNTVSIHDSLQEMAWEIVRQESVEHPGNRSRLWELNDICEALKNDKVKEAIRSIRIHLPTIKEQKLVPQILEINMSKLEVFVCGRYDELTLLKGPQFLATELRFLSWYQYPLKSLPENFSAEKLVILKLRNGRMEKLWDGVKNMVNLKQVDLSRSQNLKKLPDLSKATNLEVLLLMSCSSLTSVHPSIYSLPKLVKLDLLCCTSLTTLGSSNFNQLLHLDISFCSKLRTIPKLPLSLETLNARECQSLKTILFPSPAVEQLKENRKGILFWKCTNLDNQTLEAIGLNVRMNVMNYANQNISTPCHNHVEHCDDDNCDSYSGVYVYPGIRVPKWLEYKTRKDSIIIDLSSAPPSLLIGFIFCFVLGKYNNTDVDRFEVMITIDGEDEGKNISVPIYIDYGYEKTESDHVCVMYEQRCSTFLNNRAKNQTRFKIQVTVEEALSHKFLKGFGVSLINRSTYKKFIQEMQLRESQYQFR 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15409g00002 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 456 IPR027417 -
Vium15409g00002 977 SUPERFAMILY Toll/Interleukin receptor TIR domain 45 168 IPR035897 -
Vium15409g00002 977 Gene3D - 43 196 IPR035897 -
Vium15409g00002 977 Gene3D - 363 446 IPR042197 -
Vium15409g00002 977 FunFam Disease resistance protein (TIR-NBS-LRR class) 46 198 - -
Vium15409g00002 977 Gene3D Ribonuclease Inhibitor 565 766 IPR032675 -
Vium15409g00002 977 PRINTS Disease resistance protein signature 229 244 - -
Vium15409g00002 977 PRINTS Disease resistance protein signature 304 318 - -
Vium15409g00002 977 PRINTS Disease resistance protein signature 644 660 - -
Vium15409g00002 977 PRINTS Disease resistance protein signature 397 411 - -
Vium15409g00002 977 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 50 754 IPR044974 GO:0006952
Vium15409g00002 977 SMART till_3 49 170 IPR000157 GO:0007165
Vium15409g00002 977 ProSiteProfiles TIR domain profile. 48 196 IPR000157 GO:0007165
Vium15409g00002 977 Pfam TIR domain 49 199 IPR000157 GO:0007165
Vium15409g00002 977 Pfam NB-ARC domain 214 444 IPR002182 GO:0043531
Vium15409g00002 977 Gene3D - 197 359 IPR027417 -
Vium15409g00002 977 SUPERFAMILY L domain-like 522 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15409g00002 Vium-Chr15409 59198 63118 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15409g00002 50 742 WRKY Transcription Factor Family AT4G12020 31.989 1.53e-81 288