Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15403g00001 ATGTCGGTGCTGATCGTGACGAGCTTAGGGGACCTTGTGGTCGATTTGCACACCAACAAATGCCCCTTGACCTGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGGTGTTTATTTCACACTGTTCAAATTTTAACAGCTCAAACTGGCGATCCAACTGGCACAGGAACTGGTGGTGATTCTGTTTATAAGTTTCTTTACGGCGATCAAGCTCGATTTTTCAGTGATGAAATTCATATTGATCTTAAGCATTCGAAAACTGGAACGGTTGCCATGGCAAGTGCTGGGGAGAATTTAAATGCTTCACAGTTCTATATCACACTACGAGATGACCTTGACTACCTTGATGGCAAGCACACAGTCTTTGGTGAGGTAGCTGAAGGATTTGAGATTTTAACTAAAATAAATGAGGCTTATGTGGACGACAAAGGAAGACCACTTAAAAATATAAGAATCAAGCACACATACATCCTAGTGGATCCTTACGACGATCCTTCTGAACTATCGGAGTTCATTCCTGAAGCTTCTCCAGAAGGAAAACCTAAAGATGAGGTAATGATTTATTGCCACACTGTATTGCATTAA 594 0.404 MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCKIKYYNGCLFHTVQRXLTAQTGDPTGTGTGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFEILTKINEAYVDDKGRPLKNIRIKHTYILVDPYDDPSELSEFIPEASPEGKPKDEVMIYCHTVLH 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15403g00001 198 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 189 IPR035542 -
Vium15403g00001 198 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Vium15403g00001 198 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Vium15403g00001 198 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Vium15403g00001 198 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Vium15403g00001 198 Gene3D - 1 173 IPR029000 -
Vium15403g00001 198 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Vium15403g00001 198 SUPERFAMILY Cyclophilin-like 1 176 IPR029000 -
Vium15403g00001 198 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Vium15403g00001 198 CDD cyclophilin_RRM 4 169 IPR035538 -
Vium15403g00001 198 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15403g00001 Vium-Chr15403 18736 30379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15403g00001 3 166 U-box Gene Family AT5G67530 40.854 3.11e-35 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15403g00001 K12735 - vum:124823100 395.201