Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15402g00002 ATGGCGGGGTTCTTCTCTCTAGGAGGAAGGCATAACAAAGCAGAAGACGAGGAGGATCACAGAGAAGACAACAACAACAACAATAATACTAACAGTCAATTTTTGTTCAGAAACGTTAACGACGAGATCTACAACACCAACAAGGGCTTCGAGATATGGCCACAATCCTCGTACCACCACAACTTCACCAACTACTACTCCTTCGGTGTGGGCCCTAGTCGCAGGAACAACACCGCCAACAACAGCTCCTCCAACAACGTAAACGACGACGTTTCTGTCTCTTTCTCGGATGAGTCCAACCGCTTCGGCTTCACCGTCATGAGGTCCGGAGGCGGCGTGGGAGGCGGCGGAGGCGGCGGGATGAACTGTCAGGACTGTGGCAACCAGGCCAAGAAAGACTGTTCGCACCTCAGATGCAGAACCTGCTGCAAGAGTCGAGGGTTTCAGTGCCAGACTCACGTTAAGAGCACTTGGGTTCCCGCCGCCAAACGCCGTGAACGACAGCAACAACTCGCTGTGTTGCAGCAACAAAATCAACCACCACAGTTTCGTGGAGATCACTCCAAACGACACAGGGAAAGTATCGAAGGTGTTGCAGCCGGTGGTTCCCTCGCTTGCGCTCCAGTTCCTATCACCACCACAGGGTTGGAGGTGGGTCAATTTCCACCGGAGCTGAACTCGCCAGCGGTGTTTCGGTGCGTCAAAGTGAGTGCAATGGATGCACCGGACGAGCGTTACGCGTACCAAACCGCAGTGAACATAGGAGGGCACGTGTTCAAGGGAATTCTCTACGATCAAGGAGTGGACGGTCCTTACGCCAGTGCAGGTTGCGAGGGTTCCTCCGGTGGCGGCGGTGAAGCTCGGCCACTCGCTCTCATGGCCGCCACAACCACAACCACAACAGCTGGAAACCCTTTTGACGCTTCACTCTACCCGGCTCCGATGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGATCCTAA 993 0.5448 MAGFFSLGGRHNKAEDEEDHREDNNNNNNTNSQFLFRNVNDEIYNTNKGFEIWPQSSYHHNFTNYYSFGVGPSRRNNTANNSSSNNVNDDVSVSFSDESNRFGFTVMRSGGGVGGGGGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAVLQQQNQPPQFRGDHSKRHRESIEGVAAGGSLACAPVPITTTGLEVGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGVDGPYASAGCEGSSGGGGEARPLALMAATTTTTTAGNPFDASLYPAPMNAFMAGTQFFPPPRS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15402g00002 330 NCBIfam LRP1 C-terminal domain 220 268 IPR006511 -
Vium15402g00002 330 MobiDBLite consensus disorder prediction 1 34 - -
Vium15402g00002 330 Pfam Domain of unknown function (DUF702) 120 269 - -
Vium15402g00002 330 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 302 IPR007818 GO:0003700|GO:0006355
Vium15402g00002 330 MobiDBLite consensus disorder prediction 10 25 - -
Vium15402g00002 330 NCBIfam putative zinc finger domain, LRP1 type 122 164 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15402g00002 Vium-Chr15402 15626 17762 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15402g00002 1 330 C2H2 Transcription Factor Family AT1G75520 45.623 6.57e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vium15402g00002 DUF702 1.3e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15402g00002 - - gmx:100807290 455.292