Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15401g00008 ATGTGCTGTGTTTCCAAGGGGAAACCTTCTCAAATGGGTCTACTGATGGAGGATGAGTGTGCAAAAGAAGAGATGCATCATAGAATTTCTGCTTTGCTTGAGTTTTCTGCTGCGGATGATCTAATTGGCTTCAAAGACGCGGTTGAAAAGGAGGCTCAGGATGTTGATGGGGTGGGGTTGTGGTATGGAAGGCGTGCTGGCTCAAAGAAAATTAGTTATGAAGAGAGGACTCCTCTCATGGTTGCTGCTACGTTTGGAAGCCTTGATGTGTCTGCTTATATTCTTGGCACGGGTGGTGTTGACGTTAACAGGGCCAGTAGGTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCTGTTGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTAGTGCTGTTGATGCTGATGGTAACAGGCCAATTGACTTGATTGTCTCTGTGGCTAATTCTGTCTTCAGTCCAAGGGCCAGGGTGCTACAGGCCCTCCTGGAGGGTACCTGTGATGCTGCTGCTGATCAGACATATTTCTCACTTCCTCAAGTGATTGACCAAATTGAGGAACAAAGGCAAGAAATGACCACATCTCGTGTTTCAAAAGATTATCCCATTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATGGCACTGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCCAGGGCCTATTCTCATGACTGGACCGAATGCCCCTTTGTTCATCCCGGGGAGAACGCTAGGCGACGTGATCCAAGGAAGTACCATTACAGCTGTGTCCCTTGTCCTGAGTTTAGGAAGGGATCTTGCAGCAAAGGGGATGCCTGTGAGTATGCTCATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTACCGGACAAGGCTCTGCAAGGATGAGAGTGGATGCACAAGGAGAGTTTGCTTCTTTGCACACAAGCCAGAGGAGCTTCGCCCCTTGTATGCTTCTACTGGTTCTGCTATTCCTTCTCCAAGGTCCTATTCTGCTGGTGCTTCTGCATTGGAGATGGGTTCAATTAGCCCAATTGCCCTTGGTTCTCCATCTGTCTTGATACCAACTTCCTCAACACCACCTTTGACTCCATCTGGAGCATCTTCTCCTATTACTGGTTCCATTTGGTCTCAATCTAATGCTTCGATCCCCACCCTGCTGCTGCCCAAAAGCAGATTGAAGACTGCTTCAACTGCAAGAGACATTGATTTGGATTTTGAACTGCTTGGACTTGAAGCTCATCGGCGTAGACAACAGCTGATGATGGATGACATGTCTGGTCTTTCCTCTCCTAACTGGAAAATTTCCATGCCTAATAGTCCATCTTTTCGTGTTTCTATGAGTGATCACATTGGGGAGTTAAACAGGCTTTCAGGGGTGAAGCCATCAAACCTTGATGATAGCTTTGGATCTCTTGAACAATCAATTTTTTCTAAATTCCATGGAATCTCACTTGATGTTGCAGGACCTCAGTTACAATCTCCAACTGGAATCCAAATGCGTTCAAATATGAACCAGCAGCTGGGGGGCTATTCCTCGGGCCTTTCCACCTCAAACATGGTTGGATCAAGATCCTTCAGGGTTGATCCATCTTCTGAAGGAGCCTCGGTGGCTTTGAATCCAAGAGTTGCTGCTTTTGCTAAGCGTAGCCATAGCTTTATCGAGCGAAGCATGGTGTACCATCATTCTGAGGTTCCTTCTCCAAAGGTCTCTACTTTCACTAACTGGGGCTCACCTGATGGAAAACTTGATTGGACCATAAATGGAGATGAGCTGAATAAGCTGAGGAAATCTGCTTCCTTTGGGTTTCGAAGCAGCAACAGTCCTCTTACAAAGGATTCAACCAAAATGCCTGCAAATGTTGATGATGAGCCAGACGTGTCTTGGGTTAACTCACTCGTTAAGGATGCTCCACCAGAATCTGGAGTCGAAGATCAGCGAAAACAATGCCATAATGGAACAGAAGCAATTCCAGCGTGGTTGGAGCAAATGTACTTGGATCAGGAGCAAATGGTGGCATGA 2070 0.4662 MCCVSKGKPSQMGLLMEDECAKEEMHHRISALLEFSAADDLIGFKDAVEKEAQDVDGVGLWYGRRAGSKKISYEERTPLMVAATFGSLDVSAYILGTGGVDVNRASRSDGATALHCAVAGGSAASVEVVKLLLDASADVSAVDADGNRPIDLIVSVANSVFSPRARVLQALLEGTCDAAADQTYFSLPQVIDQIEEQRQEMTTSRVSKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKPEELRPLYASTGSAIPSPRSYSAGASALEMGSISPIALGSPSVLIPTSSTPPLTPSGASSPITGSIWSQSNASIPTLLLPKSRLKTASTARDIDLDFELLGLEAHRRRQQLMMDDMSGLSSPNWKISMPNSPSFRVSMSDHIGELNRLSGVKPSNLDDSFGSLEQSIFSKFHGISLDVAGPQLQSPTGIQMRSNMNQQLGGYSSGLSTSNMVGSRSFRVDPSSEGASVALNPRVAAFAKRSHSFIERSMVYHHSEVPSPKVSTFTNWGSPDGKLDWTINGDELNKLRKSASFGFRSSNSPLTKDSTKMPANVDDEPDVSWVNSLVKDAPPESGVEDQRKQCHNGTEAIPAWLEQMYLDQEQMVA 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15401g00008 689 ProSiteProfiles Zinc finger C3H1-type profile. 273 295 IPR000571 GO:0046872
Vium15401g00008 689 Gene3D - 28 179 IPR036770 -
Vium15401g00008 689 ProSiteProfiles Ankyrin repeat region circular profile. 109 143 - -
Vium15401g00008 689 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515
Vium15401g00008 689 SUPERFAMILY Ankyrin repeat 58 154 IPR036770 -
Vium15401g00008 689 Pfam Ankyrin repeats (3 copies) 70 142 IPR002110 GO:0005515
Vium15401g00008 689 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 293 IPR000571 GO:0046872
Vium15401g00008 689 Gene3D - 269 331 - -
Vium15401g00008 689 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Vium15401g00008 689 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Vium15401g00008 689 PANTHER UNKEMPT FAMILY MEMBER 34 653 IPR045234 -
Vium15401g00008 689 MobiDBLite consensus disorder prediction 619 641 - -
Vium15401g00008 689 SMART ANK_2a 109 141 IPR002110 GO:0005515
Vium15401g00008 689 SMART ANK_2a 74 104 IPR002110 GO:0005515
Vium15401g00008 689 FunFam Zinc finger CCCH domain-containing protein 66 226 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15401g00008 Vium-Chr15401 85524 88666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15401g00008 24 684 C2H2 Transcription Factor Family AT5G12850 39.335 1.88e-145 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium15401g00008 Ank_2 2.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15401g00008 - - gmx:100795085 1154.04