Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium153g00004 ATGGCTCTCGGTGACGATGCACAGCACCACTCTCCCTCCATCCTCGATGCGCTTCTCTGCGAAGAGCGTGTCACCTTCGACGAAGATTTCGATGCTAACGGCGCTGAGTGTGAGATCAACGACGATGACCCATCTGGGAGAAAGTTGCAATCTTTTCCTTTGGCTTTGCTTCAAAATGATCTGTTCTGGGAAGATGAAGAGCTTGTGTCTTTAATCTCGAAAGAGGGAGAGACCCATTCGTGTTCTCTTAGTGCCATTGCCGATGGGCCCTTAGAAGGCTCTCGTGTGGAGGCTGTGAACTGGATTTCAAAAGTCTGTGGACATTATGGGTTTTCTGCTTTGACCACAGTTCTTGCTGTTAACTACTTTGATCGGTTCATCCCATGTCTGAGGTTTCACAGGGACAAGCCGTGGATGACACAGCTCACTGCCGTTGCTTGTTTGTCCCTTGCTGCAAAAACCGAAGAGACCCATGTGCCGCTTCTTTTGGACCTTCAAGTGGAGGAATCGAGGTTTGTGTTTGAGGCGAAGACCATTCAGAGAATGGAGCTGCTAGTGCTGTCTACTCTTAAATGGAGGATGCATCCGGTGACTCCAATTTCTTTCTTTGAACACATTGTCAGAAGGCTTGGTTTGAAGAGTCGCTTGCATTGGGAGTTTCTATGGCGTTGTGAGCGGGTTCTTCTCAATGTCACTGCGGATTCAAGGGCTATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACCATGATCCATGTTATTAAAGAGATTGAATCATTTAACGCTACAAAGTACATTGATCAGCTTCTTGGTTTACTAAAGATTAGCGAGGAACAAGTGAACCAGTGCTACAAGCTCATGCAGAAAATATTAGGTCGCTATGAAGGCATTTACAGCCTTCACCAGAAACGCAAGCGTCTAACTGAACCAAGTAGCCCAGGTGGTATCCTTGATTCAACTTTCAGCTGTGATAGCTCAAATGATTCGTGGGCATTGTCATCATCAGTCTCACTCTCACTGGAGCCGCTGTTTAAGAGGAGAAGACCTCAGGACCAGCAAATGCGACTGCCTTCTGTTAGTCGCGTGTCAATTGATGTTCTTAATAGCCCTCGTTAA 1116 0.4668 MALGDDAQHHSPSILDALLCEERVTFDEDFDANGAECEINDDDPSGRKLQSFPLALLQNDLFWEDEELVSLISKEGETHSCSLSAIADGPLEGSRVEAVNWISKVCGHYGFSALTTVLAVNYFDRFIPCLRFHRDKPWMTQLTAVACLSLAAKTEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNVTADSRAMSYLPSTLAAATMIHVIKEIESFNATKYIDQLLGLLKISEEQVNQCYKLMQKILGRYEGIYSLHQKRKRLTEPSSPGGILDSTFSCDSSNDSWALSSSVSLSLEPLFKRRRPQDQQMRLPSVSRVSIDVLNSPR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium153g00004 371 SMART cyclin_7 100 188 IPR013763 -
Vium153g00004 371 Gene3D - 93 195 - -
Vium153g00004 371 SMART Cyclin_C_2 197 310 IPR004367 -
Vium153g00004 371 PANTHER CYCLINS 86 292 IPR039361 -
Vium153g00004 371 FunFam CYCLIN D32 196 285 - -
Vium153g00004 371 CDD CYCLIN_AtCycD-like_rpt1 95 192 - -
Vium153g00004 371 SUPERFAMILY Cyclin-like 179 292 IPR036915 -
Vium153g00004 371 SUPERFAMILY Cyclin-like 62 195 IPR036915 -
Vium153g00004 371 Gene3D - 196 285 - -
Vium153g00004 371 Pfam Cyclin, C-terminal domain 197 294 IPR004367 -
Vium153g00004 371 Pfam Cyclin, N-terminal domain 94 194 IPR006671 -
Vium153g00004 371 FunFam D3-type cyclin 88 195 - -
Vium153g00004 371 CDD CYCLIN_AtCycD-like_rpt2 197 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium153g00004 Vium-Chr153 46406 48299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium153g00004 7 361 Core Cell Cycle Gene Families AT5G67260 50.138 1.83e-110 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium153g00004 K14505 - gmx:100785030 605.905