Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium153g00003 ATGACTCTCTTCTGTCAACCTCTCATAATTTCGCTGCTTCTTCTCCTCGCTGTTAACCACTCTTCTGGCCTCACTAGAGACGGCGTTCTGTTGCTTTCTTTCAAGTACGCTGTGCTCAACGACCCTCTTTACGTCCTCGCTAACTGGAACTACACTGACCAGACACCGTGTTCCTGGAACGGCGTTTCTTGTTCCACCGTACCAGCCACGAACGGTACCGAGTACCGCGTCACATCGTTGTCGCTTCCCAATTCTCAGCTTTTGGGTTCAATTCCCTCCGATCTGGGTTCCATTGAACATCTTCAAGTCCTAGACCTTTCCAACAACTCCCTCAACGGCTCTCTTCCTTCTTCTCTCTCCCAAGCCTCCGAGCTTAGGTTCCTCAATCTCTCTAACAATTTAATAACAGGGGAGGTTCCCCAGTCCATTCCCCAGCTTCAGAATCTCCAATGCCTAAACCTCTCCGACAATGCTTTGGCGGGAAAACTGCCTCACGATTTGTCCGACATGCACAACCTAACTCTGGCTTCCTTCAAGAACAACTACTTGTCAGGTTTTCTTCCCAGCGGGTTGAGAACGTTGCAGGTTTTGGATCTGTCTTCAAACCTGTTCAACGGGACTCTTCCCGCGGATTTCGGCGGAGACGCCATGCGTTACATAAACATCTCCTACAACAGATTTTTCGGCGAAATCCCGATGGAGTTCGCAGCAAACATTCCCGGAAACGCCACCGTCGACCTTTCGTTCAACAACCTCACCGGCCAAGTTCCCGACTCCGCTGTGTTTTTGAATCAGAACTGGAAATCTTTCTCCGGTAACGTCAACCTGTGTGGAGAACAAACGAAGAATGTGTGCCCTGTTCCTTCTTCGTCGTCCTCTAAACCGAATATTTCTGCTCCTATATCTCCTCCTGCAATCGCGGCAATCCCGCGGACGTTTGATTCTTCGGCGGCGCCTAGGGGGAAAAAAGGGAGTGGTCTGAAGCGAGGAACGATTATAGGAATCGTTGTGGGAGACGTAATTGGGATAGCGATCCTTGGCATGATATTCGCGCAGGTGTACCGGTTGAAGAAAAAAAAGGAGGTGGTGAAGAAGGAGGCGGTTGTGAGGAGTGGAAGTGGTAGTGAGAGTGAGAGTTCGTGGGAGTCTAGAAGGTTTATGAGGTGGTCGTGTTTGAGTAAGAGAGCGGAAGATGAAGAGTGTTCAGAGACAAGAAGCAGTTGTGATAGCGAGGTGGAGGGGCAGAAGCCAAAGGGTCCTCAACAGGAGGAGAAAACGGGGACTCTTGTGATTGTGGACGGAGAACGACAGCTTGAACTGGAAACGCTCCTGAAGGCTTCTGTGTACATATTGGGTGCGACGGGGTCCAGCATAATGTACAAGGCTGTCTTGGAAGATGGTATGTCCTTGGCGGTTCGGAGAATCGGGGAGAGCGGTGTGGAGCGGTTCAAGGACTTCCAGAACCAGGTTCGACTTATTGCTAAACTGGTGCACCCTAATCTGGTTCGCATTCGAGGCTTCTACTGGGGACACGATGAGAAACTCATCATCTATGATTTCGTTCCAAACGGTTGTCTTGCCAATGTTCGTTACAGTAAGTCATTTCCATTTTCCTCTAANTTGGATCTGTCTTCAAACCTGTTCAACGGGACTCTTCCCGCGGATTTCGGCGGAGACGCCATGCGTTACATAAACATCTCCTACAACAGATTTTTCGGCGAAATCCCGATGGAGTTCGCAGCAAACATTTCCGGAAACGCCACCGTCGACCTTTCGTTCAACAACCTCACCGGCCAAGTTCCCGACTCCGCTGTGTTTTTGAATCAGAACTGGAAATCTTTCTCCGGTAACGTCAACCTGTGTGGAGAACAAACGAAGAATGTGTGCCCTGTTCCTTCTTCGTCGTCCTCTAAACCGAATATTTCTGCTCCTATATCTCCTCCTGCAATCGCGGCAATCCCGCGGACGTTTGATTCTTCGGCGGCGCCTAGGGGGAAAAAAGGGAGTGGTCTGAAGCGAGGAACGATTATAGGAATCGTTGTGGGAGACGTAATTGGGATAGCGATCCTTGGCATGATATTCGCGCAGGTGTACCGGTTGAAGAAAAAAAAGGAGGTGGTGAAGAAGGAGGCGGTTGTGAGGAGTGGAAGTGGTAGTGAGAGTGAGAGTTCGTGGGAGTCTAGAAGGTTTATGAGGTGGTCGTGTTTGAGTAAGAGAGCGGAAGATGAAGAGTGTTCAGAGACAAGAAGCAGTTGTGATAGCGAGGTGGAGGGGCAGAAGCCAAAGGGTCCTCAACAGGAGGAGAAAACGGGGACTCTTGTGATTGTGGACGGAGAACGACAGCTTGAACTGGAAACGCTCCTGAAGGCTTCTGTGTACATATTGGGTGCGACGGGGTCCAGCATAATGTACAAGGCTGTCTTGGAAGATGGTATGTCCTTGGCGGTTCGGAGAATCGGGGAGAGCGGTGTGGAGCGGTTCAAGGACTTCCAGAACCAGGTTCGACTTATTGCTAAACTGGTGCACCCTAATCTGGTTCGCATTCGAGGCTTCTACTGGGGACACGATGAGAAACTCATCATCTATGATTTCGTTCCAAACGGTTGCCTTGCCAATGTTCGTTACAGGAAGGCGGGCACCTCGCCGACTCATTTACCGTGGGAAATCAGGCTGAAGATAGCGAAAGGGGTGGCACGTGGACTGACTTATCTCCACGAGAAGAAACACGTGCATGGAAACTTGAAGCCTAGCAATATTCTGCTGGGCAATGACATGGAGCCCAAGATTGGAGACTTTGGGCTTGAGAGGATAGTCACCGGTGACACCAGTTATAAGGCTGGCGGATCGGCGCGTATTTTTGGGAGCAAGAGATCCACGGCCTCCCGGGACAGTTTTCAGGACATTACCTATGGGCCAAGCCCGAGCCCGAGCCCGAGCCCTAGTTCCATGATGGGCTTATCTCCTTATCATGCTCCCGAGTCGCTGAGGAACCTGAAGCCTCACCCCAAGTGGGACGTGTACTCTTTTGGGGTCATGTTTCTTGAGCTTCTAACGGGGAAGATTGTGGTTTTGGATGATACGGGCCAAGGGCCTGGGGTTTTGACGGAGGATAAGAACCGGGCCTTGCGTATGGTTGATATGGCTATCAGGGCCGACATGGAGGGGAGAGAGGAGGCCCTGTTGACCTACTTCAAGCTAGGGTATAGTTGTGTGTCTAGCGTTCCACTTAAAAGGCCTTCAATGAAAGAGGTGCTACAAGTTCTTGAAAAGATCTCATCCTCCTCTTCTTCCTCCTCATATTAA 3303 0.5059 MTLFCQPLIISLLLLLAVNHSSGLTRDGVLLLSFKYAVLNDPLYVLANWNYTDQTPCSWNGVSCSTVPATNGTEYRVTSLSLPNSQLLGSIPSDLGSIEHLQVLDLSNNSLNGSLPSSLSQASELRFLNLSNNLITGEVPQSIPQLQNLQCLNLSDNALAGKLPHDLSDMHNLTLASFKNNYLSGFLPSGLRTLQVLDLSSNLFNGTLPADFGGDAMRYINISYNRFFGEIPMEFAANIPGNATVDLSFNNLTGQVPDSAVFLNQNWKSFSGNVNLCGEQTKNVCPVPSSSSSKPNISAPISPPAIAAIPRTFDSSAAPRGKKGSGLKRGTIIGIVVGDVIGIAILGMIFAQVYRLKKKKEVVKKEAVVRSGSGSESESSWESRRFMRWSCLSKRAEDEECSETRSSCDSEVEGQKPKGPQQEEKTGTLVIVDGERQLELETLLKASVYILGATGSSIMYKAVLEDGMSLAVRRIGESGVERFKDFQNQVRLIAKLVHPNLVRIRGFYWGHDEKLIIYDFVPNGCLANVRYSKSFPFSSXLDLSSNLFNGTLPADFGGDAMRYINISYNRFFGEIPMEFAANISGNATVDLSFNNLTGQVPDSAVFLNQNWKSFSGNVNLCGEQTKNVCPVPSSSSSKPNISAPISPPAIAAIPRTFDSSAAPRGKKGSGLKRGTIIGIVVGDVIGIAILGMIFAQVYRLKKKKEVVKKEAVVRSGSGSESESSWESRRFMRWSCLSKRAEDEECSETRSSCDSEVEGQKPKGPQQEEKTGTLVIVDGERQLELETLLKASVYILGATGSSIMYKAVLEDGMSLAVRRIGESGVERFKDFQNQVRLIAKLVHPNLVRIRGFYWGHDEKLIIYDFVPNGCLANVRYRKAGTSPTHLPWEIRLKIAKGVARGLTYLHEKKHVHGNLKPSNILLGNDMEPKIGDFGLERIVTGDTSYKAGGSARIFGSKRSTASRDSFQDITYGPSPSPSPSPSSMMGLSPYHAPESLRNLKPHPKWDVYSFGVMFLELLTGKIVVLDDTGQGPGVLTEDKNRALRMVDMAIRADMEGREEALLTYFKLGYSCVSSVPLKRPSMKEVLQVLEKISSSSSSSSY 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium153g00003 1100 Pfam Leucine Rich Repeat 100 120 IPR001611 GO:0005515
Vium153g00003 1100 Gene3D Ribonuclease Inhibitor 25 191 IPR032675 -
Vium153g00003 1100 Gene3D Ribonuclease Inhibitor 192 287 IPR032675 -
Vium153g00003 1100 FunFam Leucine-rich repeat receptor-like protein kinase 538 631 - -
Vium153g00003 1100 FunFam Os07g0541700 protein 866 955 - -
Vium153g00003 1100 SUPERFAMILY Protein kinase-like (PK-like) 794 1092 IPR011009 -
Vium153g00003 1100 SMART LRR_typ_2 191 214 IPR003591 -
Vium153g00003 1100 SMART LRR_typ_2 146 170 IPR003591 -
Vium153g00003 1100 SMART LRR_typ_2 98 122 IPR003591 -
Vium153g00003 1100 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 540 1096 IPR046959 -
Vium153g00003 1100 SUPERFAMILY L domain-like 31 278 - -
Vium153g00003 1100 CDD STKc_IRAK 795 1091 - -
Vium153g00003 1100 SUPERFAMILY L domain-like 537 622 - -
Vium153g00003 1100 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Vium153g00003 1100 MobiDBLite consensus disorder prediction 750 770 - -
Vium153g00003 1100 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 191 - -
Vium153g00003 1100 Gene3D Ribonuclease Inhibitor 527 632 IPR032675 -
Vium153g00003 1100 MobiDBLite consensus disorder prediction 406 420 - -
Vium153g00003 1100 Gene3D Transferase(Phosphotransferase) domain 1 865 1099 - -
Vium153g00003 1100 PRINTS Leucine-rich repeat signature 146 159 - -
Vium153g00003 1100 PRINTS Leucine-rich repeat signature 101 114 - -
Vium153g00003 1100 ProSiteProfiles Protein kinase domain profile. 789 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium153g00003 1100 MobiDBLite consensus disorder prediction 750 764 - -
Vium153g00003 1100 Pfam Protein kinase domain 795 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium153g00003 1100 MobiDBLite consensus disorder prediction 406 426 - -
Vium153g00003 1100 MobiDBLite consensus disorder prediction 964 990 - -
Vium153g00003 1100 Gene3D Phosphorylase Kinase; domain 1 762 864 - -
Vium153g00003 1100 Gene3D Phosphorylase Kinase; domain 1 418 520 - -
Vium153g00003 1100 FunFam Leucine-rich repeat receptor-like protein kinase 193 287 - -
Vium153g00003 1100 SUPERFAMILY Protein kinase-like (PK-like) 450 544 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium153g00003 Vium-Chr153 21423 25350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium153g00003 10 533 Receptor kinase-like Gene Family AT4G37250 53.875 2.94e-178 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium153g00003 Pkinase 4.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium153g00003 - - vum:124826005 1980.68