Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15396g00008 ATGGGAAGACAGCCATGTTGTGATAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAACTTATCAGCTTCATTCTCACCAATGGCCAATATTGCTGGAGAGCTGTCCCTAAGCTTGCAGGATTATTAAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGACGAATTACCTTAGACCAGACTTAAAGAGAGGCCTTCTTTCAGAATACGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTCGGCAATAGATGGTCCAAGATTGCTTCTCATCTTCCTGGAAGAACTGATAATGAGATAAAAAACCACTGGAACACCCACATAAAGAAAAAGCTCAAGAAAATGGGCATTGATCCTATCACACACAAACCACTCCCAAATCAACAAACCCAAAATCATCCCCAACAAGAACAACAACAACTACACCAACCACCTGAAGAAGAGCAAAATTACCAACAACCTTTGCAAATTGACTTTGACACCGAGGTTGACCCTAACAAGGAGCTAGAGATTTCAGTTGAATCATCAAATGTCAGTGAAGGCAAAGAGGAAGAGCAAATCATGGCAACACCTCAATTTGAGACAATGGATCAGCTAATGAATGGGTTCTGCACAGATGAAGTTCCAATAATTGAACCTAATGAGATTCTAATGCCTTGTGCTCCTTCCTCTTCAGCCACCTCTACATCTTCTTCAAATTCAACCAACATCCTTGAAGACCTGCAGCTACCTGATTTTGAATGGTTTTGTGATTACATTGATAGTAGTCTTAGTAATAACAATAACAACCATGAAGACAAGAACACCAATAATAGCAGTGTGGCTTTGTGGGATGATGATGACGACTTTATTAGCAAACTTAATTGGCTGGTCTCTGAAGACGATGACTGTGATGGTCCTCTCACTCAATTCTCAAGAACTGTCACGGATTCATGGGCTTTTGGCTTGTTTTGA 966 0.4151 MGRQPCCDKVGLKKGPWTAEEDKKLISFILTNGQYCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPITHKPLPNQQTQNHPQQEQQQLHQPPEEEQNYQQPLQIDFDTEVDPNKELEISVESSNVSEGKEEEQIMATPQFETMDQLMNGFCTDEVPIIEPNEILMPCAPSSSATSTSSSNSTNILEDLQLPDFEWFCDYIDSSLSNNNNNHEDKNTNNSSVALWDDDDDFISKLNWLVSEDDDCDGPLTQFSRTVTDSWAFGLF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15396g00008 321 SMART sant 66 114 IPR001005 -
Vium15396g00008 321 SMART sant 13 63 IPR001005 -
Vium15396g00008 321 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 259 - -
Vium15396g00008 321 CDD SANT 16 61 IPR001005 -
Vium15396g00008 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium15396g00008 321 Gene3D - 11 67 - -
Vium15396g00008 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium15396g00008 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium15396g00008 321 Gene3D - 70 153 - -
Vium15396g00008 321 MobiDBLite consensus disorder prediction 127 155 - -
Vium15396g00008 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium15396g00008 321 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Vium15396g00008 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium15396g00008 321 CDD SANT 74 112 IPR001005 -
Vium15396g00008 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium15396g00008 321 FunFam MYB transcription factor 11 67 - -
Vium15396g00008 321 MobiDBLite consensus disorder prediction 122 155 - -
Vium15396g00008 321 FunFam MYB-related transcription factor 70 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15396g00008 Vium-Chr15396 51265 53668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15396g00008 1 321 MYB Transcription Factor Family AT5G16600 48.315 7.85e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium15396g00008 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15396g00008 K09422 - gmx:100792103 462.611