LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium15395g00003	ATGATGGAAGGACAGCGGCATTCAGTTGATATTCCAATTTCTAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCATTGAGGGATCCCTCAACTAATTCTATGAGCAAGCTCTGTTATTTGGTGGATAATCTGCATTGGGAAAATGGTTCTGCTAATGACATTTCTCTTAGGTTTTCTGATGCTGCTAAGCCATGTGATTCTGATGATAATGCTGCTCTCATATCAAGAAGTTTAGGTTTCAAGGGACAAAAGGAGCAGAAAGATGCTGATTCTGCATTCAACTCAAGGTTGAGGCCTAGTGGGATTTCTTGTCAGAGTCTCCAACAAGATGGTGAACCAGTAGTTTACTCTAAGCCTAATCTTCAATGCATTTCTGGAAACAAATCACCAAGTGAAAGTTGTGGTAGCAACCATGGGGGTAAAGGATTGGACTTGGCTTCTATTGTGCTTCCACGTAATAATGATTTCAAGGATGGGGATTCATGTTATGTAGCAACTGCTAGATCATCTCAATTAGAGAGAATAGATTGCTCTAAGTCAGCAAAAAAGTCTCTGCGCAAGAATCAAGTAAAACCATCAGAGTTAGTAGGCAGTGTTGATGGCAATGTCAGTCCATACCCTTCTGGTTATGATGATTTCTCACCCTATAGTGGTTCAGTTGGCATAAATCAAGGTATGGATAGTTTAGATGATAATGATAATGGGTGTGGAATAAGCTGTTGTTGGTCAAAATCACCAAGATTTAGAGAAGCAAATCTATATGGTGAGATAGAAGACCGTCCTTTGGTATCTCACCGTGTTGATGAGTCAGATCTTCACGCACACAGAAGCATGAGAAACAATGGTGGTGGGATTGGTCTGAATTTGGAAACTCCTAGAAGTTTGTCCATGAAATTTAGGCCTAAAACATTTAGTGATTTGGTTGGACAAGATGTGGTAGTAAGGTCTCTGTTGGGGGCCATCTCCAGAGGAAGGATAACATCATTTTATCTGTTCTATGGTCCACGTGGAACCGGCAAGACATCTGCCTCTAGGATATTTGCTGCTGCACTGAATTGTCTTTCTTTTGAGGAACAGAGGCCATGTGGCCTATGCAGAGAATGTATTGTATTCTTTTCTGGAAGAAGTAAAGATTTTAAGGAAGTGGATTCTGTGAGAATCAATCGCACCGACCAGGTTAAGTCCCTTGTTAAGAGTGCAAGCACGCCTCCAGTCTCCTCACGTTTCAAGGTTTTCATTATTGATGAGTGTCAGCTATTGAATGGGGAAACATGGGCAAGCATTTCAAATAGCCTAGACAACCTTTCTCAACATGTGGTTTTCGTGATGATAACTCCTGATTTGGATAAGCTTCCTCGGAGTGTAGTTTCCCGGGCTCAGAGGTATCACTTTCCAAAGGTTAAAGACCCTGACATTGTATGCAGATTACAAAGTATTTGTGCCGAAGAAGGTCTTGATTTTGAACAGGAAGCTTTGGACTTTATTGCTGCAAAATCTTGTGGGTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTGGGTAAAAAGATCAATATCTCTTTAGCTTATGAGCTTACTGGGATCGTTTCAGATGATGAATTACTCGATTTGCTGGATCTAGCTTTTTCATCCGATACTTCAAATACAGTCATTAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCAACTTGTATCACAATTAGCAAATCTCATTATGGACATACTTGCAGGGAAATGTGAAAATGGTGGTTCAGAAGTCAGAAGTAGATTTTATAGGAAATATACCTCGGAAGCTGATCTGCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGCTGAGAATTTCGAAGAATCAAACAACATGGTTCACCGTAGCTCTCCTACAGCTAAGCTCTGTAGATTATCAATGCGTGGATGCAAATGACACCAAATTTAGTCTTAGAGGTGCATGCAATGGAGTTCAAAACTTGGAGCATTTTGCTAACAAGTCATACAGATTAGAAGTGCCGGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCCACTGAGATTTGTCATTCTAGTCAGCTCAAAACTTTTCTCAGGAAGAAGGGGAAGTTGTCGTCACTTCATGTTGATCGCAGTACAGCTTGTCTTGCTATTGCCGAGATAGAGTTCCACCATAGTCACCATGTATCCAAGGCCGAGAAGTCATGGAAAATGATTGCAAGCTCTTTGCAATTCATATTGGGTTGCAATGTGGAGTTGAGGATCACTTATACACCTTGTGCTTCAGATTCTAAGTATTGCAAACTGAAGAGATCAACTTTCAGTTTCTTCACTTGTTCCCGCAGAAATCGGCAACAGAAGTCACTGTCATCTAATGAACAAGGAAGTGAATCAGATTATGGTGATTGCGCCTCTGAAAATCCCATGATGAAGGACAAAACTTCTACCTCTGATTGTGGAATGGATGCTGTAACAGCTTTGAGGAGTTATGAAGGGAATTTGCTGAGCTCAGGGGAAAGATTTTTGAATAGATCATTTCAAGAGAGTACGAAGACAACGTGTGCTGAAGTTGATTCTTCCAAGGAAAAGGGTTGCAACGGTGCTCATCTAGATCCATCAATCCTCGATTCAGATAATGACCACTTTAACTGTTTTCCTAAAACCCTTTGGCTTCAAAAGAAGTTCCGTTCTTCGTATTCATCCAAGTTGTCTTTTCAAGGCATTCAACAACAGAAAGATTTTGTTTTGTCTGTCCCGAAGTGTACATGTTCTGGGACATATACCTATGCTAATGAACCCTGCATTTTTTCTGGTAGTTGTAAGAATTGCACCAAAGCCTCTTAG	2871	0.4075	MMEGQRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLCYLVDNLHWENGSANDISLRFSDAAKPCDSDDNAALISRSLGFKGQKEQKDADSAFNSRLRPSGISCQSLQQDGEPVVYSKPNLQCISGNKSPSESCGSNHGGKGLDLASIVLPRNNDFKDGDSCYVATARSSQLERIDCSKSAKKSLRKNQVKPSELVGSVDGNVSPYPSGYDDFSPYSGSVGINQGMDSLDDNDNGCGISCCWSKSPRFREANLYGEIEDRPLVSHRVDESDLHAHRSMRNNGGGIGLNLETPRSLSMKFRPKTFSDLVGQDVVVRSLLGAISRGRITSFYLFYGPRGTGKTSASRIFAAALNCLSFEEQRPCGLCRECIVFFSGRSKDFKEVDSVRINRTDQVKSLVKSASTPPVSSRFKVFIIDECQLLNGETWASISNSLDNLSQHVVFVMITPDLDKLPRSVVSRAQRYHFPKVKDPDIVCRLQSICAEEGLDFEQEALDFIAAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTGIVSDDELLDLLDLAFSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENGGSEVRSRFYRKYTSEADLQKLNNALKILSETEKQLRISKNQTTWFTVALLQLSSVDYQCVDANDTKFSLRGACNGVQNLEHFANKSYRLEVPEDHKGTLDSIWYKATEICHSSQLKTFLRKKGKLSSLHVDRSTACLAIAEIEFHHSHHVSKAEKSWKMIASSLQFILGCNVELRITYTPCASDSKYCKLKRSTFSFFTCSRRNRQQKSLSSNEQGSESDYGDCASENPMMKDKTSTSDCGMDAVTALRSYEGNLLSSGERFLNRSFQESTKTTCAEVDSSKEKGCNGAHLDPSILDSDNDHFNCFPKTLWLQKKFRSSYSSKLSFQGIQQQKDFVLSVPKCTCSGTYTYANEPCIFSGSCKNCTKAS	956

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium15395g00003	956	SMART	AAA_5	326	469	IPR003593	GO:0016887
	Vium15395g00003	956	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	296	516	IPR027417	-
	Vium15395g00003	956	Pfam	DNA polymerase III, delta subunit	310	467	-	-
	Vium15395g00003	956	FunFam	Protein STICHEL-like 1 isoform C	531	644	-	-
	Vium15395g00003	956	CDD	HLD_clamp_pol_III_gamma_tau	467	530	IPR045085	-
	Vium15395g00003	956	Gene3D	-	288	465	IPR027417	-
	Vium15395g00003	956	Gene3D	-	531	644	-	-
	Vium15395g00003	956	PANTHER	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	295	699	-	-
	Vium15395g00003	956	MobiDBLite	consensus disorder prediction	796	826	-	-
	Vium15395g00003	956	Coils	Coil	606	629	-	-
	Vium15395g00003	956	NCBIfam	DNA polymerase III subunit gamma/tau	294	640	IPR012763	GO:0003887\|GO:0005524\|GO:0006260\|GO:0009360
	Vium15395g00003	956	SUPERFAMILY	post-AAA+ oligomerization domain-like	537	639	IPR008921	GO:0003677\|GO:0006260
	Vium15395g00003	956	Gene3D	-	469	530	-	-
	Vium15395g00003	956	MobiDBLite	consensus disorder prediction	796	810	-	-
	Vium15395g00003	956	FunFam	DNA polymerase III subunit gamma/tau	467	530	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium15395g00003	Vium-Chr15395	2614	6798	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium15395g00003	298	582	Core DNA Replication Machinery Family	AT1G21690	25.952	2.74e-14	73.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium15395g00003	-		-	gmx:100812040	1551.57