Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15394g00002 ATGGCAGCTATGATGGGTTTTTACAACAGCACAGAGTTTCAGCTTCCCTCAGATCCGTTCAGGGGTGAACTAATGGAAGTTCTTGAACCTTTTATGAAGAGTCCTTCCTCAACCCCTTCCTTTTCTTCCTCACCTTCAAACTCCTCTTTTCCTTCTACTTCTTACTCTCCTTCTCCCATCTACTTCCCCTCTTCACCCTCCTTCCCTGTTATGTACTCAAACAACTGCTCAGCATCGATGACCCATGCATTTGCCGACGGGTTATCCCTATCCAACACCCAAAACATCATAGGCTTCGCGCATGGACAACCAACGTCTCTTCTCGGCCTCAACCACCTAACCCCCTCTCAGATATCTCAGATCCAGGCTCAAATCCAGACCCAGAGCCAGCAGCAGCAGAATCCCAACACCCTCAACTTCCTCGGGACCAAGCCCATCCCCATGAAGCACGTGGGCATGCCTCTGAAGCCCACGAAGCTTTATCGAGGGGTGCGGCAGAGGCACTGGGGGAAGTGGGTGGCTGAGATCAGACTCCCCAAGAATCGGACAAGGCTCTGGCTGGGAACGTTCGACACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAACTCCGAGGTGACTTCGCCAGGCTTAACTTCCCAAACCTCCGTCACCAGGGTTCCTCGGTGGGCGGAGGCTTCGGGGAGTACAAGCCGCTCCATTCCTCCGTTGACGCGAAGCTTCAGGCCATATGCGAAGGCCTGGCTGAGATGCAGAAACAGGGGAAGACCGAAAAGCCTCAGGGTTCGTCGAAGAGGTCACGGTCCAAAGTGGCTCCTCCGCCAGAGAAGGGTGATTCTGAGAAGGGTTCGGACGACAACACCAGCAACAAGTGTTGCAAGGTGGAAGCTTCCTCGTCTCCTGTTACGACGGAGAGCGAGGGGTCTGAAGGTTCTTCGCCTCTCTCGGATCTGACGTTTGCCGACGTGAGCGAGCCTCAGTGGGAAGGTGATTCAGATAGTTTTAATCTCTATAAGTACCCTTCTTATGAGATCGACTGGGATTCTCTGTGA 1062 0.5405 MAAMMGFYNSTEFQLPSDPFRGELMEVLEPFMKSPSSTPSFSSSPSNSSFPSTSYSPSPIYFPSSPSFPVMYSNNCSASMTHAFADGLSLSNTQNIIGFAHGQPTSLLGLNHLTPSQISQIQAQIQTQSQQQQNPNTLNFLGTKPIPMKHVGMPLKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGGFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKPQGSSKRSRSKVAPPPEKGDSEKGSDDNTSNKCCKVEASSSPVTTESEGSEGSSPLSDLTFADVSEPQWEGDSDSFNLYKYPSYEIDWDSL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15394g00002 353 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Vium15394g00002 353 FunFam Ethylene-responsive transcription factor 2 159 218 - -
Vium15394g00002 353 MobiDBLite consensus disorder prediction 262 292 - -
Vium15394g00002 353 CDD AP2 159 219 IPR001471 GO:0003700|GO:0006355
Vium15394g00002 353 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Vium15394g00002 353 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Vium15394g00002 353 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Vium15394g00002 353 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Vium15394g00002 353 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Vium15394g00002 353 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
Vium15394g00002 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 353 - -
Vium15394g00002 353 MobiDBLite consensus disorder prediction 255 338 - -
Vium15394g00002 353 MobiDBLite consensus disorder prediction 293 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15394g00002 Vium-Chr15394 5559 7447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15394g00002 1 353 AP2-EREBP Transcription Factor Family AT1G78080 52.957 1.46e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium15394g00002 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15394g00002 K09286 - gmx:100800478 425.246