Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1538g00009 ATGAAGTGTTTCTTCTTCAAAGACAAGTGTAAATCCGCCCCCGAATTGCATAAGAAGAAAAACCCCGCCGTGAACCGCGCCGCGAACTCCACCGGCTCCCTATCGTCGCCCAAGAGCGTGAAGGACTTGTACAGAGAGAAAGAGCACAGCTTCAGAGTTTTCAATTTTCAGGAGCTCAGAGATGCCACCCAAGGTTTCAATAGGACGCTGAAGCTTGGAGAAGGGGGGTTCGGGAGTGTGTATAAAGGATCCATCAGACCCTCCGATGGCCAGGGTGATCCATTTCCAGTAGCTATCAAAAGGCTCAACACGCGTGGCTTCCAGGGTCATAAAGAATGGCTTGCTGAAGTTCAATTTCTTGGCATTGTTAATCACCCAAATTTGGTTAAGCTTTTGGGATACTGCTCCATGGACGGAGAAAGAGGAATCCAACGGCTGCTGGTGTACGAGTTCATGCCCAACGGGAGCTTGGAGGATCACCTCTTCAATAAAAGTTTACCACCTCTCCCTTGGAAAACAAGATTGGAGATTATGCTTGGTGCCGCCCAAGGATTAGCTTATCTCCATGAAGGACTGGAAATTCAGGTGATCTACAGAGACTTCAAATCTTCAAATGTTCTATTGGATGCGGATTTCCATCCAAAGCTCTCAGATTTTGGTCTTGCTAGAGAAGGACCACAAGGCGATCAGACTCATGTATCCACTGCGGTGGTTGGGACACAGGGGTATGCTGCACCAGAGTACATTGAAACGGGTCATCTGAAAGTTCAGAGCGACATGTGGAGTTTTGGTGTAGTGCTGTATGAGATCCTCACAGGAAGAAGATCATTGGAAAGAAACCGTCCCACTGCAGAACAAAAGCTTCTAGATTGGGTGAAACAGTATCCTGCTGACACCAGCAGGTTCGTGGTGATAATGGATCCTCGTCTCAGGAACCAGTATTCTCCCCAAGCAGCTCGCAAAATAGCCAAGTTGGCTGATAGCTGCTTAAAGAAGAATCCAGAAGATAGACCATCCATGAGTCAGATAGTGGAAGCCTTGAAGCAAGCCTTGCAACATTCTGAAATTCCAAACTCTTCTCAAGACATTGCTGAATCCTCCTCATCCCGGTCTAAACTGGTCAGAAAAAACGTCATTCAGATGGCAGCATTGTTGTCGAGTGCACTGCAGATGTTTGTAGTAATGTGA 1188 0.4714 MKCFFFKDKCKSAPELHKKKNPAVNRAANSTGSLSSPKSVKDLYREKEHSFRVFNFQELRDATQGFNRTLKLGEGGFGSVYKGSIRPSDGQGDPFPVAIKRLNTRGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSMDGERGIQRLLVYEFMPNGSLEDHLFNKSLPPLPWKTRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDADFHPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADTSRFVVIMDPRLRNQYSPQAARKIAKLADSCLKKNPEDRPSMSQIVEALKQALQHSEIPNSSQDIAESSSSRSKLVRKNVIQMAALLSSALQMFVVM 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1538g00009 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vium1538g00009 395 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 152 361 - -
Vium1538g00009 395 Pfam Protein tyrosine and serine/threonine kinase 70 347 IPR001245 GO:0004672|GO:0006468
Vium1538g00009 395 SUPERFAMILY Protein kinase-like (PK-like) 48 347 IPR011009 -
Vium1538g00009 395 ProSiteProfiles Protein kinase domain profile. 66 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1538g00009 395 Gene3D Transferase(Phosphotransferase) domain 1 152 374 - -
Vium1538g00009 395 Gene3D Phosphorylase Kinase; domain 1 46 151 - -
Vium1538g00009 395 PANTHER OS01G0588500 PROTEIN-RELATED 36 352 - -
Vium1538g00009 395 CDD STKc_IRAK 72 349 - -
Vium1538g00009 395 ProSitePatterns Protein kinases ATP-binding region signature. 72 100 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1538g00009 Vium-Chr1538 106321 110093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1538g00009 3 347 Glycoside Hydrolase AT3G07070 43.137 1.46e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium1538g00009 PK_Tyr_Ser-Thr 3.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1538g00009 - - gmx:100786966 689.108