Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15371g00008 ATGGACTTTGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAACAAGATGACCGCGACTCAAGCAGGAAGAAGAAAGAGACAGAAAGGAGCTACCGGAAACGCGAGGAGATCGACGAGGTCTCCGAGGAGAGGAAGAACAAGAGGTCAAGGGGCGACGATGAGAATGGCTCGAAGAAGGATAAAGATCGCGAAGACCGCGACAGGGAGCGCCACAGAAGTAGCAGGGATAGAGATAGAGATAGAGACAGAGATATCGAGAGAAGTAGCAGGGACAGGGACAGAGACAGAGATAGGGAGAAGGAGAGAGACAAGGAGAGGGATCGTAGGGACAGAGACAAAGATAAGGAGAAGAGGGAGAAGGAGAGGGAAAGGGAGAGAGACAGAGATAGAGACCGAAGGGACAAAGAACGGGAAGAGAGGGAGAGGTCTCGGAGGAGCAGGAGTCGTTCTGAGCGAGAAAGAGAAAGAGAACGAGAACGGGATTTCGACACCAGAGATACCAGGAGATTTAGGGACAAGAAAGAGGCAGCAGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGGACTGTTTTTGCATACCAGATGCCCTTAAAGGCGTCAGAGAGGGATGTATATGAATTCTTCTCAAAAGCTGGCAAGGTAAGGGATGTCCGTCTAATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTACATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAGCCTTCTGAGGCCGAAAAGAACCTTGTCCAATCTAATACCACCAGTGGAGCTGCTGGGGTAGTAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTGGGGAATCTTCACTTCAACATGACAGAGAGTCAGTTAAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTGCAACTGCCTCTTGACTTGGAGACAGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCTCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAGCTAGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAACTGGACCGCTCTGGCATTGCAGCAAGCATTGGTCTACCGGTTGGGAATGGGTCAGCTCCTGCTCAACAGGCTATGATGCCTATTGGTAATCCAGGTGTAATATCAGCACCAGCTGTCCCTACGCAAATTGTGCCTACCCCGGTGATTGAACCTGTTGGAAACCCCAGTGAGTGTCTACTGTTGAAGAATATGTTTGATCCCAACACTGAGACTGAGCCAGATTTTGATCTAGACATTAAAGAGGACGTGGAAGAAGAGTGTTCCAAATATGGACGGGTGAAACATATTTATGTTGACAAAAGTGCAGGTTTTGTGTATTTGCAATTTGAAACAGTCGAAGCAGCTGGTGCTGCTCAACGTGCAATGCACACGAGGTGGTTTGCAGGAAGAATGATTTCTGCTATCTATATGCAACCTCAGATATACGAAGCCAACTTTAAAGGGGACGCTTGA 1662 0.4717 MDFDEYDYLEKTVEEQDDRDSSRKKKETERSYRKREEIDEVSEERKNKRSRGDDENGSKKDKDREDRDRERHRSSRDRDRDRDRDIERSSRDRDRDRDREKERDKERDRRDRDKDKEKREKERERERDRDRDRRDKEREERERSRRSRSRSERERERERERDFDTRDTRRFRDKKEAAEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPVGNGSAPAQQAMMPIGNPGVISAPAVPTQIVPTPVIEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKSAGFVYLQFETVEAAGAAQRAMHTRWFAGRMISAIYMQPQIYEANFKGDA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15371g00008 553 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 369 IPR000504 GO:0003723
Vium15371g00008 553 CDD RRM1_RBM39_like 190 262 - -
Vium15371g00008 553 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 549 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vium15371g00008 553 FunFam Splicing factor CC1-like 113 274 - -
Vium15371g00008 553 Gene3D - 115 277 IPR012677 -
Vium15371g00008 553 MobiDBLite consensus disorder prediction 169 188 - -
Vium15371g00008 553 NCBIfam splicing factor, CC1-like family 65 549 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vium15371g00008 553 SUPERFAMILY RNA-binding domain, RBD 457 541 IPR035979 GO:0003676
Vium15371g00008 553 SUPERFAMILY RNA-binding domain, RBD 290 368 IPR035979 GO:0003676
Vium15371g00008 553 Gene3D - 456 552 IPR012677 -
Vium15371g00008 553 MobiDBLite consensus disorder prediction 1 159 - -
Vium15371g00008 553 CDD RRM2_RBM23_RBM39 293 370 - -
Vium15371g00008 553 FunFam Splicing factor CC1-like 275 380 - -
Vium15371g00008 553 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 266 IPR000504 GO:0003723
Vium15371g00008 553 SMART rrm1_1 190 262 IPR000504 GO:0003723
Vium15371g00008 553 SMART rrm1_1 461 538 IPR000504 GO:0003723
Vium15371g00008 553 SMART rrm1_1 292 365 IPR000504 GO:0003723
Vium15371g00008 553 Coils Coil 134 161 - -
Vium15371g00008 553 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 384 478 IPR029123 -
Vium15371g00008 553 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 363 IPR000504 GO:0003723
Vium15371g00008 553 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 258 IPR000504 GO:0003723
Vium15371g00008 553 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 483 535 IPR000504 GO:0003723
Vium15371g00008 553 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 465 542 IPR000504 GO:0003723
Vium15371g00008 553 CDD RRM3_RBM39_like 459 540 - -
Vium15371g00008 553 Gene3D - 287 383 IPR012677 -
Vium15371g00008 553 MobiDBLite consensus disorder prediction 12 159 - -
Vium15371g00008 553 SUPERFAMILY RNA-binding domain, RBD 182 270 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15371g00008 Vium-Chr15371 30406 37441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15371g00008 263 364 Eukaryotic Initiation Factors Gene Family AT4G34110 34.951 2.72e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15371g00008 K13091 - gmx:100802446 716.842