Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15371g00001 ATGTCTGGGAAGGCGAAGAGGAGAGACGAAGCCGGTGGTTCTGACGCCGACTCTGAAGTTCACCCGCCGCCAAAAAAGATATCCAAGAAGGATTCCGACGACGAATCCGACTCCATTGTCGTTTGCGAGATTTCTAAGAACAGGAGGGTTTCTGTGAGGACCTGGCAAGGCAGGGTTGTGGTTGACATTCGCGAGTTTTACACCAAGGATGGCAAGAAATATCCTGGCAAAAAAGGTATCTCGTTGACCATGGATCAGTGGAATGTTCTTCGCACTCATGTTGAAGAAATTGACAAAGCAGTCAGTGAGAATTCTTAG 318 0.4811 MSGKAKRRDEAGGSDADSEVHPPPKKISKKDSDDESDSIVVCEISKNRRVSVRTWQGRVVVDIREFYTKDGKKYPGKKGISLTMDQWNVLRTHVEEIDKAVSENS 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15371g00001 105 Gene3D Transcriptional Coactivator Pc4; Chain A 28 105 IPR009044 GO:0003677|GO:0006355
Vium15371g00001 105 SUPERFAMILY ssDNA-binding transcriptional regulator domain 41 102 IPR009044 GO:0003677|GO:0006355
Vium15371g00001 105 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 23 104 IPR045125 GO:0003713|GO:0060261
Vium15371g00001 105 MobiDBLite consensus disorder prediction 1 38 - -
Vium15371g00001 105 FunFam Putative transcriptional co-activator 32 105 - -
Vium15371g00001 105 Pfam Transcriptional Coactivator p15 (PC4) 42 92 IPR003173 GO:0003677|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vium15371g00001 PC4 3e-25 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15371g00001 K25815 - gmx:100820368 156.762