Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15357g00003 ATGGGTACTGAAATAAGTTACGCACTTTCAAAATTGCATATGCTATCCACTTCAGATTATGCCTCCGTTGTGTCCATGAACATTTTTGTGGCTCTGCTGTGTACTTGCATTGTCATTGGCCATCTTCTTGAGGAGAATCGCTGGGTGAATGAATCTATCACTGCCCTTTTTATAGGTGTTTGCACTGGTGTAGTCATTCTGTTGCAAAGTCGCGGCAAAAGCTCGCATCTTCTAGTTTTCAGCGAAGATCTTTTCTTTATATACCTTCTGCCTCCTATCATATTTAATGCAGGGTTTCAAGTGAAAAAGAAACGGTTCTTTGTTAACTTCATGACCATTATGCTTTTTGGAGCTGTTGGTACATTAATAAATTGTAGCATCATAACTTTCGGTGTCATACAAATTTTTAAGAGAATGGGTGTTGGAAAATCACTGGAGATAGGAGATTATCTAGCAATTGGGGCAATATTTGCTGCAACAGATTCAGTGTGCACATTGCAGGTGCTAAACCAGGATGAGACACCTTTACTATATAGTCTTGTGTTTGGCGAGGGTGTTGTTAACGATGCTACATCTGTTGTGCTTTTCAATGCAATCAAAAGTTTTGATCTCGACATAATTGACCACAGAATTGGTTTACATTTTTTCGGCAATTTCTTCTACCTGTTTATCGCAAGCACCATGCTTGGTGTCCTGGCCGGTCTACTCAGCGCTTACATTATTAAAACGCTTTATATTGGCAGGCACTCTACAGATCGCGAGGTTGCTCTCATGATGTTAATGGCATACCTTTCCTACATTCTAGCTGAATTATGGTATCTGAGTGGCATTCTCACTGTATTCTTCTGTGGGATTGTTATGTCACATTATACTTGGCATAATGTGACTGAGAGCTCAAGAATCACTACCAAACATGCTTTTGCAACTCTCTCTTTTGTTCTTGAAACCTTTATCTTCCTTTATGTTGGTATGGATGCGTTGGACATTGAAAAGTGGAGGTTTGTTAGCGATAGGCCGAAAACATCTGTTGCTGTTAGTTCAGTTTTATTGGGTCTCGTACTTGCCGGAAGAGCAGCATTTGTTTTTCCCCTATCCTTCTTATCAAACCTCACTAAAAAATCTCAAAGTGAAAAAATAAGCTTCAGGGAGCAGGTGATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCCTATAATCAGTTCACCTTGTCAGGTCACACTGAACTGCGAACCAATGCCATCATGATCACCAGCACCATCACTGTCGTGCTTGTCAGCACAGTGGTGTTTGGTTTGATGACCAAGCCACTCATAAGGTTTTTGCTGCCAGTTAGTCCACCTCCTAAACGCAAGAACAGCTTGGGAAACATGGAATCATCTAATAATCCTCCAAAATCAATCACTGTGCCCTTTCTTGGAGGCTCTCAGGATTCTGAAAACGAACTTGATGGCAATGAAGATCATCGTCCAAACACTATTCGTGCCTTACTAAGCACTTCAACTCATAATGTTCATCACTTATGGCGTACGTTTGATAATTCAGTCATGCGTCCAGTTTTCGGCGGTAGGGGATTTGTTCCTGTGGCTACTGCTTCACCAACTGGCAGAAGTAATAGTCAACAGTGGCATTAA 1647 0.4135 MGTEISYALSKLHMLSTSDYASVVSMNIFVALLCTCIVIGHLLEENRWVNESITALFIGVCTGVVILLQSRGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKRFFVNFMTIMLFGAVGTLINCSIITFGVIQIFKRMGVGKSLEIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIKSFDLDIIDHRIGLHFFGNFFYLFIASTMLGVLAGLLSAYIIKTLYIGRHSTDREVALMMLMAYLSYILAELWYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFATLSFVLETFIFLYVGMDALDIEKWRFVSDRPKTSVAVSSVLLGLVLAGRAAFVFPLSFLSNLTKKSQSEKISFREQVIIWWAGLMRGAVSMALAYNQFTLSGHTELRTNAIMITSTITVVLVSTVVFGLMTKPLIRFLLPVSPPPKRKNSLGNMESSNNPPKSITVPFLGGSQDSENELDGNEDHRPNTIRALLSTSTHNVHHLWRTFDNSVMRPVFGGRGFVPVATASPTGRSNSQQWH 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15357g00003 548 PANTHER SODIUM/HYDROGEN EXCHANGER 15 525 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vium15357g00003 548 Gene3D - 146 198 - -
Vium15357g00003 548 Pfam Sodium/hydrogen exchanger family 28 443 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vium15357g00003 548 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium15357g00003 548 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium15357g00003 548 PRINTS Na+/H+ exchanger signature 154 164 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium15357g00003 548 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium15357g00003 548 MobiDBLite consensus disorder prediction 455 494 - -
Vium15357g00003 548 NCBIfam sodium/hydrogen exchanger 3 28 446 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium15357g00003 548 MobiDBLite consensus disorder prediction 457 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15357g00003 Vium-Chr15357 15126 20281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15357g00003 10 543 Antiporters AT3G05030 74.440 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15357g00003 - - gmx:100789667 945.266