Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15330g00002 ATGGCAAACCTTGGAGCTCGAATTAATGATGTTTCATCAAACCAAGTTGAGATCCCTGTCCATTGTGATGGTGTGGAGCCAAAACCAAGTGAAGAGAGCAATATTGACTACTCTCAAAGGGCTCAGTGGCTTCGAGCAGCAGTGTTGGGAGCCAATGATGGGTTAGTCTCTGTTGCCTCACTCATGATGGGTGTTGGAGCTGTTAAGCAAGACATCAGTGCCATGATTGTTGCTGGTTTTGCTGGATTAGTTGCAGGGGCTTGTAGCATGGCAATTGGAGAGTTTGTCTCTGTGTACACTCAGTATGACATAGAGATGACTCAGCTTAAAAGAGAGAGGGAAGCTAATAATAATGGAGGAGTGAATGGAGAACCTCAAAGGGAGAAGTTGCCAAACCCATTTCAGGCTGCACTGGCATCAGCACTGGCATTTTCTGACTGA 441 0.4603 MANLGARINDVSSNQVEIPVHCDGVEPKPSEESNIDYSQRAQWLRAAVLGANDGLVSVASLMMGVGAVKQDISAMIVAGFAGLVAGACSMAIGEFVSVYTQYDIEMTQLKREREANNNGGVNGEPQREKLPNPFQAALASALAFSD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15330g00002 146 Pfam VIT family 44 117 IPR008217 GO:0005384|GO:0030026
Vium15330g00002 146 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 26 145 IPR008217 GO:0005384|GO:0030026
Vium15330g00002 146 MobiDBLite consensus disorder prediction 111 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15330g00002 Vium-Chr15330 8342 8895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15330g00002 25 145 Nodulin-like Gene Family AT3G43660 66.116 6.28e-55 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15330g00002 K22736 - gmx:100802489 226.868