Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15330g00001 ATGGATTCTCTTGGCACTAGTAGCAATGAAAGGCCAATTAACCATGTTGAGATTCTCAAACACTCTAATGATATAGAAGCAAACCCTAACCAAGACATGGAAGAAAACAATATTGAGTACCCTGAAAGGGAACATTGTCTTGGGGCAGCTGTGTTTGGAGCCAAAACTGGGTTGTTCGTAACCACCTTACTGATGATTGCCATTGAAGCTTTGAATGAAAACATCATAGTCATATTTCTTGCTGGTTTTTTAGGAATAGTTGCTGGGGCTTGCAGCATGCCAATTGAAGAGTTTGTATCTGTTGACACAGAGGTAGCTCAAATGAAAGTCCACCATAAAGAACACAACGAAATGGAGGAAGATGATATACTTCTAAACCCTTTTCAAGCTTCCTTAGCATCAGCAATTGGATTTTCTATTGGTGGAATGGTGTCAGTGCTAATAGCTACTTTCATAAGGGATTATAAGCTCAGGCTGCTAGTTATTTCTGCGGCTATGTTGGCATTGTTGATATTTGGAGGGATGATAGCAGTGCTTAGAAAAGGTAAAACTCTAGTGAGAAGGAATGGTGATAGTGGTGATTGGAGGTTAGATAACTATGGCTATTATTTTTGGCTTTAA 621 0.3929 MDSLGTSSNERPINHVEILKHSNDIEANPNQDMEENNIEYPEREHCLGAAVFGAKTGLFVTTLLMIAIEALNENIIVIFLAGFLGIVAGACSMPIEEFVSVDTEVAQMKVHHKEHNEMEEDDILLNPFQASLASAIGFSIGGMVSVLIATFIRDYKLRLLVISAAMLALLIFGGMIAVLRKGKTLVRRNGDSGDWRLDNYGYYFWL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15330g00001 206 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 30 184 IPR008217 GO:0005384|GO:0030026
Vium15330g00001 206 Pfam VIT family 114 184 IPR008217 GO:0005384|GO:0030026
Vium15330g00001 206 Pfam VIT family 48 120 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15330g00001 Vium-Chr15330 226 972 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15330g00001 28 187 Nodulin-like Gene Family AT3G43660 45.614 4.04e-37 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15330g00001 K22736 - gmx:100527486 253.832