Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1532g00002 ATGGGCAGGTATTACCACCCTTCTTCATCTTTCCTTAGTGTTGTTTACTTCCTCTTTTCTGTCTCTCCCATGGTCTTCTCCCTGCTATCACAAACCCAAACAGAAACCATGAACAGTCTCTCAAAGAATCTTACTGGTAGGATTCCATGGACTGGTTCTGACCCATGTGCATGGAAGGGAGTGAGTTGTGACCTTGCCTACTCCTCTGTAGTAGGGATTTCTTTATCTGGTTTTTCACTCAATTCTTCTGACTTTCTGCCCCTTGTTTGCAAAATTGAAACTTTAGAGATTCTTGATGTCTCCAATAACCATCTGAGCTCAATCCATGATGGTTTCATCACTGAGTGTGGAAAGATAAAGGGTTTGAAGCTGTTGAATTTTAGTTATAATATTTTAGGTGTTTTACCTACTTTTCATGGCTTTGATGCATTGGAATCTCTGGATATGTCTTTCAATGCGATGAGAGGGAATATTGTTTTAGAGATAGATGTGTTGGTTAGCCTTAAAATTTTGAATCTTAGTTTCAATGTATTCTCTGGGTCTCTTCCTACCAAATTGGGAATGTCCATGGTTTTGGAGCACCTTCTGCTTTCTAACAATAGTTTTGAAGGCAAAATCCCTGATGAATTATTGAGTTATGAAAACTTGACTTGGATTGATCTTAAGAACAATATACTTTCACACTCTATTCCTACCAATATTGGGAAGCTTTCTAAATTAGAAACTTTGATCCTTTCCACTAATGCCCTCACTGGTGAAATTCCAACTTCACTGGCGAACATCACCAAACTTTCAAGATTTGCAGCAAATCAGAACAACTTCACAGGTTCTATACCTTCTGGGATTACAAAATATCTCACGAGTTTGGATCTCAGTTATAATGGTCTGTCTGGCGCCATTCCAGAAGACTTTTTATCTCCACAACAGTTGCAGGTTGTAGATTTGACCAATAATATGTTAAATGGGTCTTTACCTACGAAAGTTTCTCCAAATTTGTTCAGGTTGAGGTTTGGGAGCAATCAGCTGAGTGGAAACATTCCTCCAGATGCTTTTGTACAAGTTCAGAATTTGACATACTTGGAGCTGGATGACAATATGTTGATGGGATCGATACCAGCTGAATTGAGTTCTTGCAAGAGTTTGACATTGTTGAATTTAGCTCAGAATCGGTTGAGTGGTGTATTCCCACAACAGCTTGGTAATCTTACCAATCTCCGTGTCTTGAAGCTCCAATTGAACAATCTTAGTGGTGCAATCCCAACTCAAATTGGCCAACTTAATAAGTTGTTAACCCTGAATTTGAGCCGGAATTCTCTGAGTGGACCAATTCCACCTGATATTGCAAATTTAAGCAGTCTTAATTTCCTGTATTTGTACGGCAACAATCTTAATGGTTCCATACCGACATCCATTGGCATGTTGGATGATCTTTTAGAACTCCAACTTGGGGAAAACCACCTGAGAGGTGTGATTCCAAGCATGCCATTGAGTCTGCAGGTTACATTGAATCTTAGTAGCAACTACTTTAGTGGTTCTATTCCTACCAGTTTTGGTAGTTTAAGAAGCCTAGAAATCTTGGATCTCTCAAATAACGCCTTTTCTGGTGGAATTCCTGATTATCTTACTGGCATGCTGGCTTTGACACGGTTGATACTTTCTAACAATCCTCTGTCTGGAGCAATCCCAAACTTTAGTCACCATATCGATATTGAATTTTCTGGAACTAATCTAAAAAATTATACTGCACAGAAGAACGAAACTGCCAACACAGGGCCCAGAGGGGCAAAGAATGGAATAGGCGTTGGAGTGGCCATTCTCATTGCAATTGTAGCAGCTATTTTTCTTGTTGGCTTTGTCACTCTGTTGGTTTTGTCAGTGTCACGCCACTATTACAGGGTTAATGATGAGCATTCACAGTCAACAGAAGTTCGTCAGCATCCTCAGGTCATGCAAAGTAATCTGTTAACTCCTAATGGAATACATAGATCAAACATTGACTTCTCCAAAGCCATGGAAGCTGTTGCCGAAACATCAAATGTTACTCTTAAAACAAGGTTTTCAACTTATTATAAAGCTGTTATGCCGTCTGGTTCAATCTATTATGTCAAGAAACTGAACTGGTTTGACAAGGTATTCCAAGTGGGAAGTCATGATAAATTTGTTAAAGAGCTAGAAGTATTGGCCAAATTGAACAATTCGAATGTCATGACTCCTTTGGCCTATGTTCTGTCCACTGACACTGCTTATATACTATACGAGTTTATCTCAAATGGCTCCCTCTTTGATGTTCTTCATGGAAGCATGGATTTGACATTAGATTGGGCTAGCAGATACAGTATAGCTGTTGGAGTGGCTCAAGGACTTTCCTTTCTTCATGGATTCGCCTCTAGTCCAATACTACTCCTTGACCTGTCAAGTAAAAGTATTATGCTGAAGTCCCTCAAGGAGCCTCTAGTTGGGGATATTGAACACTACAAAGTGATTGATCCCTCAAAAAGTACAGGGAACTTTTCTGCAGTTGCTGGTTCAGTTGGTTATATTCCTCCAGAGTATGCATACACAATGACAGTAACAATGGCTGGGAATGTCTACAGCTTTGGTGTGATTCTGCTTGAACTGCTGACAGGAAAGCCTGCAGTGACTGAGGGAACGGAATTGGTGAAGTGGGTTTTGCGTAACTCCACAAACCAAGATTACATTCTTGACTTTAATATCAGTAGAACATCACAAGCAGTCAGAAACCAGATGCTTGCAATTCTTGAGATTGCTCGTGTTTGTGTTGGTACATCCCCAGAGTCAAGACCAAAGATGAAGAGTGTGCTAAGGATGCTCTTAAATGCTAGATGA 2847 0.3997 MGRYYHPSSSFLSVVYFLFSVSPMVFSLLSQTQTETMNSLSKNLTGRIPWTGSDPCAWKGVSCDLAYSSVVGISLSGFSLNSSDFLPLVCKIETLEILDVSNNHLSSIHDGFITECGKIKGLKLLNFSYNILGVLPTFHGFDALESLDMSFNAMRGNIVLEIDVLVSLKILNLSFNVFSGSLPTKLGMSMVLEHLLLSNNSFEGKIPDELLSYENLTWIDLKNNILSHSIPTNIGKLSKLETLILSTNALTGEIPTSLANITKLSRFAANQNNFTGSIPSGITKYLTSLDLSYNGLSGAIPEDFLSPQQLQVVDLTNNMLNGSLPTKVSPNLFRLRFGSNQLSGNIPPDAFVQVQNLTYLELDDNMLMGSIPAELSSCKSLTLLNLAQNRLSGVFPQQLGNLTNLRVLKLQLNNLSGAIPTQIGQLNKLLTLNLSRNSLSGPIPPDIANLSSLNFLYLYGNNLNGSIPTSIGMLDDLLELQLGENHLRGVIPSMPLSLQVTLNLSSNYFSGSIPTSFGSLRSLEILDLSNNAFSGGIPDYLTGMLALTRLILSNNPLSGAIPNFSHHIDIEFSGTNLKNYTAQKNETANTGPRGAKNGIGVGVAILIAIVAAIFLVGFVTLLVLSVSRHYYRVNDEHSQSTEVRQHPQVMQSNLLTPNGIHRSNIDFSKAMEAVAETSNVTLKTRFSTYYKAVMPSGSIYYVKKLNWFDKVFQVGSHDKFVKELEVLAKLNNSNVMTPLAYVLSTDTAYILYEFISNGSLFDVLHGSMDLTLDWASRYSIAVGVAQGLSFLHGFASSPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGNFSAVAGSVGYIPPEYAYTMTVTMAGNVYSFGVILLELLTGKPAVTEGTELVKWVLRNSTNQDYILDFNISRTSQAVRNQMLAILEIARVCVGTSPESRPKMKSVLRMLLNAR 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1532g00002 948 Gene3D Transferase(Phosphotransferase) domain 1 755 948 - -
Vium1532g00002 948 SUPERFAMILY Protein kinase-like (PK-like) 686 944 IPR011009 -
Vium1532g00002 948 Gene3D Phosphorylase Kinase; domain 1 637 754 - -
Vium1532g00002 948 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 304 585 - -
Vium1532g00002 948 FunFam Leucine-rich repeat receptor protein kinase EMS1 206 303 - -
Vium1532g00002 948 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 643 754 - -
Vium1532g00002 948 Gene3D Ribonuclease Inhibitor 285 584 IPR032675 -
Vium1532g00002 948 SUPERFAMILY L domain-like 285 562 - -
Vium1532g00002 948 Gene3D Ribonuclease Inhibitor 189 284 IPR032675 -
Vium1532g00002 948 SUPERFAMILY L domain-like 48 325 - -
Vium1532g00002 948 PANTHER OS05G0588300 PROTEIN 192 304 - -
Vium1532g00002 948 SMART LRR_typ_2 165 189 IPR003591 -
Vium1532g00002 948 SMART LRR_typ_2 402 426 IPR003591 -
Vium1532g00002 948 SMART LRR_typ_2 520 543 IPR003591 -
Vium1532g00002 948 SMART LRR_typ_2 544 566 IPR003591 -
Vium1532g00002 948 SMART LRR_typ_2 237 260 IPR003591 -
Vium1532g00002 948 SMART LRR_typ_2 92 115 IPR003591 -
Vium1532g00002 948 SMART LRR_typ_2 354 378 IPR003591 -
Vium1532g00002 948 SMART LRR_typ_2 450 474 IPR003591 -
Vium1532g00002 948 Gene3D Ribonuclease Inhibitor 27 188 IPR032675 -
Vium1532g00002 948 FunFam leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 755 948 - -
Vium1532g00002 948 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 31 185 - -
Vium1532g00002 948 PRINTS Leucine-rich repeat signature 286 299 - -
Vium1532g00002 948 PRINTS Leucine-rich repeat signature 520 533 - -
Vium1532g00002 948 Pfam Protein kinase domain 686 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1532g00002 948 ProSiteProfiles Protein kinase domain profile. 675 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1532g00002 948 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Vium1532g00002 948 Pfam Leucine rich repeat 380 439 IPR001611 GO:0005515
Vium1532g00002 948 Pfam Leucine rich repeat 501 557 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1532g00002 Vium-Chr1532 24570 36505 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1532g00002 144 948 Receptor kinase-like Gene Family AT2G41820 38.526 1.74e-156 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium1532g00002 Pkinase 3.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1532g00002 - - gmx:100796647 1338.94