Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15324g00006 ATGGTCAGAATTTCTTTCGAGAAAGCTTTTCATGAATTTCCATCAAATCTGAGGATACTCGCTGTTGACACGGATTCTACTGTTCTTGAATTCATCAAGAAGATATGTAACAAATATTGTTATGAAGTTATCACATGCACAGAATCGTTACGTGCTACTGAGATTTTGCAGGAAAGAAAACACGATATTGATTTAGTATTGATGGAGGTTCATATGCCAAAGATGGATGGCCATGAATTCTTACTTGCCAATCAAAAAATTGATGTTCCTATCATCGTGATGTCTTGGGATGACAACAAAAAATCTGTAATGAAGAGTATAAAACTTGGAGGTTGTGATTACTGGATTAAGCCTTTGCACGAGGATCGACTCAAGAACATGTGGACACATGTTGTTAGGAAGTCTATGAGTGAGAATAGGATGCGAAAAGACTATTTGAGCGGGAATTCTGAATTTGTTTCTTCTTCTACTCTTGAAATTTCAAGAAAAGTTGATAATGTCGGTGAATCACCTTCGAGAAAGAAGTCTCGTATGATATGGACATCAGAAGTGCATGGTAAATTTGTCAAAGCTGTCAATCAAATTGGACTTGCTAATGCTGTGCCAAAGAAACTTGTTGAGCTCATGAATGTGCCTGGTTTGACAAGAAACCATGTTGCTAGTCACTTACAGAAATATAGAAATACTTTGAAGAGAAAACCTCAGCAATCTGCTACAGCTATACCACTGCATAACCATCTTCGTGCAGAAGAAGCTTTGAGTATGGCACTTAATCACCCAATGGCTCCCTATACTACTAACTTTGTTTTTCCACAGTCCTCGGAAACTATGCCTAACAGTGTTTCAGTAGATACATTGCAACAACAGCAGGAAATGCAGCAGTGGATGGAGTCTTTCTTTTTATGA 906 0.3786 MVRISFEKAFHEFPSNLRILAVDTDSTVLEFIKKICNKYCYEVITCTESLRATEILQERKHDIDLVLMEVHMPKMDGHEFLLANQKIDVPIIVMSWDDNKKSVMKSIKLGGCDYWIKPLHEDRLKNMWTHVVRKSMSENRMRKDYLSGNSEFVSSSTLEISRKVDNVGESPSRKKSRMIWTSEVHGKFVKAVNQIGLANAVPKKLVELMNVPGLTRNHVASHLQKYRNTLKRKPQQSATAIPLHNHLRAEEALSMALNHPMAPYTTNFVFPQSSETMPNSVSVDTLQQQQEMQQWMESFFL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15324g00006 301 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 253 IPR045279 GO:0009736
Vium15324g00006 301 ProSiteProfiles Response regulatory domain profile. 18 132 IPR001789 GO:0000160
Vium15324g00006 301 SUPERFAMILY CheY-like 15 141 IPR011006 -
Vium15324g00006 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 175 228 IPR006447 GO:0003677
Vium15324g00006 301 SMART REC_2 17 128 IPR001789 GO:0000160
Vium15324g00006 301 Pfam Response regulator receiver domain 19 127 IPR001789 GO:0000160
Vium15324g00006 301 Gene3D - 16 146 - -
Vium15324g00006 301 CDD REC_typeB_ARR-like 19 132 - -
Vium15324g00006 301 ProSitePatterns DNA polymerase family B signature. 21 29 IPR017964 GO:0000166|GO:0003676
Vium15324g00006 301 FunFam Two-component response regulator 171 233 - -
Vium15324g00006 301 Gene3D - 172 233 - -
Vium15324g00006 301 SUPERFAMILY Homeodomain-like 173 232 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15324g00006 Vium-Chr15324 27835 29131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15324g00006 8 232 Response Regulator Gene Family AT2G25180 40.408 1.19e-50 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium15324g00006 Response_reg 2.6e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15324g00006 - K14491 vra:106778511 542.347