Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15321g00001 ATGAAATATCATAGAAAAGTAGTGCAAGAGCTGAAGCCTGCGTCGCTAATGGTGCTGTCGCAGGTTGCAACTGCGGCTGCGAACGTGCTTTATAAATTGACCATAAATGATGGAATGAGCATTATGGTCCTCACTTCCTACCGTCACATTTTCGGAGCTGCATTCTCTCTTTCTCTAGCTCTTGTTATAGAAAGAAAGAGCAGGCCAAAGTTGACGTGGAGGGTGCTTTTGATGGCATTTTTTTGCGGTCTATTTGGGGGCAGTTTAGCGCAAAATCTTTATTTCATCGGTTTGGCTTGGGTATCAGCAACATTTGCTACTTCCCTTTATAATCTCGTTCCTGTGGTTACTTTTATCTTTTCCGTTTTGTTCGGCTTGGAAAAGTTAAGCTTGCGAACCGCCTCAGGGAGGGTGAAGGTGTTGGGACCAATAATAGGAATTGTTGGGTCAATGCTGTTGACATTTTACAGAGGGGAAGAAATTAAGATGTGGAGATTCCACACTAGTCTCTTACATAAAAATCAAAAGGGGCACCTAGGA 540 0.4315 MKYHRKVVQELKPASLMVLSQVATAAANVLYKLTINDGMSIMVLTSYRHIFGAAFSLSLALVIERKSRPKLTWRVLLMAFFCGLFGGSLAQNLYFIGLAWVSATFATSLYNLVPVVTFIFSVLFGLEKLSLRTASGRVKVLGPIIGIVGSMLLTFYRGEEIKMWRFHTSLLHKNQKGHLG 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15321g00001 180 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 147 - -
Vium15321g00001 180 Pfam EamA-like transporter family 13 140 IPR000620 GO:0016020
Vium15321g00001 180 PANTHER WAT1-RELATED PROTEIN 13 167 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15321g00001 Vium-Chr15321 6957 7854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15321g00001 11 177 Nodulin-like Gene Family AT1G25270 38.323 5.90e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15321g00001 - - var:108326689 353.599