Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1531g00005 ATGGCATCTTCACGGGATTTGGAAGATTATTCATCCGAAGCCTCAAGCACCTCACAAGACATTCATAAATCTAATGCTGAAGAAGGGAAGAAGCATGAGGTGACAAAAATGAAGGAGAAAGGTATCAAATTTGAAGAAAGTAAGGTTTCCAATTCCAAAACTCACATGGTGTTAGATTTTGTTAAGTTTTCCAATGATCAAACACTTTGTGGGTCAAAAGTGGAATTGGATTTTTTCAATGCCAAGGGTTCATCTTCTAGGGCAAATCACACTCAAGGAAGAGATGAACACAATAAAGAGGAGAAGCCATCATCAGAAACCAACAAGACCTTTTCCTGCAACTTCTGTCAGAAAGAGTTTTCTTCTTCACAAGCATTGGGAGGACACCAAAATGCCCATAAACAAGAACGTGCTCTAGCAAAACGAAGACAAGGGATTGATGGTGGTGCTTTTGGAAACCCTCATTTTCTCTATTACCCTTATAATCCCACACACTCTTTCTATGGATCTTACAATAGGGCACTTGGGGTTCGAATGGAGTCAATGATTCACAAACCTATGTATCCTTCATCTTCTTCACTAGGTTTAAGGTTTGGTCAAGGGTTGTTGAGACAAGAGACGATGAACTCTTCTTCTTGTTCTTCTTCTGCTGTTGGTTTGCAAGCAAATGCTGGAATCAAGATTATGGGGAGTGACACAACTTTTAGGGCACAACGTGATCATGGTAATATCAGACACAGTATTCCATTCCTTGCAGAATCTTCTGCAAATGTTACTGCCAAAACAAATTTGACTCCATTGAATCAAGTGGAAGACAATGATAATGATCGCACCAAGAAAGAAGGAACTTCAAATCCTAGATCTTCAGATGAAATTGATTTGTCACTTAAACTTTAG 897 0.3913 MASSRDLEDYSSEASSTSQDIHKSNAEEGKKHEVTKMKEKGIKFEESKVSNSKTHMVLDFVKFSNDQTLCGSKVELDFFNAKGSSSRANHTQGRDEHNKEEKPSSETNKTFSCNFCQKEFSSSQALGGHQNAHKQERALAKRRQGIDGGAFGNPHFLYYPYNPTHSFYGSYNRALGVRMESMIHKPMYPSSSSLGLRFGQGLLRQETMNSSSCSSSAVGLQANAGIKIMGSDTTFRAQRDHGNIRHSIPFLAESSANVTAKTNLTPLNQVEDNDNDRTKKEGTSNPRSSDEIDLSLKL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1531g00005 298 MobiDBLite consensus disorder prediction 272 298 - -
Vium1531g00005 298 MobiDBLite consensus disorder prediction 83 108 - -
Vium1531g00005 298 MobiDBLite consensus disorder prediction 1 22 - -
Vium1531g00005 298 MobiDBLite consensus disorder prediction 1 45 - -
Vium1531g00005 298 MobiDBLite consensus disorder prediction 261 298 - -
Vium1531g00005 298 SUPERFAMILY beta-beta-alpha zinc fingers 108 138 IPR036236 -
Vium1531g00005 298 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 298 IPR044246 GO:0009788
Vium1531g00005 298 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Vium1531g00005 298 Gene3D Classic Zinc Finger 86 147 - -
Vium1531g00005 298 MobiDBLite consensus disorder prediction 89 106 - -
Vium1531g00005 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Vium1531g00005 298 MobiDBLite consensus disorder prediction 23 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1531g00005 Vium-Chr1531 35514 36410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1531g00005 104 200 C2H2 Transcription Factor Family AT5G10970 51.515 8.16e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1531g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1531g00005 - - gmx:102663393 346.28