Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1531g00002 ATGCAAGCAGATGAGGACGTCGGAAAGATAGCATTGGCAGTTCCTGTTTTAGTATCTAAAGCTCTGGAGTTATTTTTGCAAGATCTCTGTGACCGCACTTATGAAATAACTCTTCAGAGAGGAGCTAAGACCATGAATGCATTGCATTTGAAATATTGTGTACAAAGTTATAACGTCTTCGACTTTCTGAGAGACATTGTCAGCAGGGTTCCTGACTATGGGCATGGACATGGCCATTCCGAGACTGGAGCTGATGATCGTGCCCTTTCAAAGAGAAGGAAAGCTGCTGGTGTTGAGGGCAATGAAAGTGATGAAGAGGCCAAGAGGAGTAAGATGCGCGAGTTGGGCCACACCAGCACTCCTAGTAGGGGAAGAGGCCGAGGTAAAGGAAGAGGCCGAGGACGAGGGGTTCGAACTGTTGAAAGAGACATCATTCATCAGCAGGTTGAATCTGAGCCTTGCTCCTCTATTCAACAAATTAGCAATGATATGCCTAACACAAGTCTGCCAATAGATAATGGTGTGCAATCCAAGGAGTATACAAAGGAGACTTCTGCAGCTCATGAGGAAAGTGCTCAATCTTTCCGTAACATTGATCTGAATGCTAACTTAAACGAAAATGGAGACAAAAATGCCAGTGCAGCTGTTGAAGCTCCATTGCCTGAGCCTGCTGACATGGACATTAAACATGAAGAAATTCCAGGCTGGTCCCTATCGGATGCCGACAAGATGGCCATTGACACTATGCAACTGGCAACCCTCGCTAGTAGACTAGAAGAGGATGATGAAGATTATGATGAGGAAGGGTAA 810 0.4543 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKYCVQSYNVFDFLRDIVSRVPDYGHGHGHSETGADDRALSKRRKAAGVEGNESDEEAKRSKMRELGHTSTPSRGRGRGKGRGRGRGVRTVERDIIHQQVESEPCSSIQQISNDMPNTSLPIDNGVQSKEYTKETSAAHEESAQSFRNIDLNANLNENGDKNASAAVEAPLPEPADMDIKHEEIPGWSLSDADKMAIDTMQLATLASRLEEDDEDYDEEG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1531g00002 269 SUPERFAMILY Histone-fold 1 70 IPR009072 GO:0046982
Vium1531g00002 269 MobiDBLite consensus disorder prediction 73 120 - -
Vium1531g00002 269 MobiDBLite consensus disorder prediction 73 141 - -
Vium1531g00002 269 Gene3D Histone, subunit A 1 69 IPR009072 GO:0046982
Vium1531g00002 269 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 54 IPR003958 -
Vium1531g00002 269 MobiDBLite consensus disorder prediction 149 168 - -
Vium1531g00002 269 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1531g00002 Vium-Chr1531 18543 23547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1531g00002 1 258 CCAAT-HAP5 Transcription Factor Family AT3G12480 45.588 7.60e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium1531g00002 CBFD_NFYB_HMF 4.3e-12 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1531g00002 K21752 - gmx:100810093 405.216