Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1531g00001 ATGAGGAAGAAGCTCGACACCCGTTTCCCCGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGACGTCGGAAAGATAGCATTGGCAGTTCCTGTTTTAGTATCTAAAGCTCTGGAGTTATTTTTGCAAGATCTCTGTGACCGCACTTATGAAATAACTCTTCAGAGAGGAGCTAAGACCATGAATGCATTGCATTTGAAATATTGTGTACAAAGTTATAACGTCTTCGACTTTCTGAGAGACATTGTCAGCAGGGTTCCTGACTATGGGCATGGACATGGCCATTCCGAGACTGGAGCTGATGATCGTGCCCTTTCAAAGAGAAGGAAAGCTGCTGGTGTTGAGGGCAATGAAAGTGATGAAGAGGCCAAGAGGAGTAAGATGCGCGAGTTGGGCCACACCAGCACTCCTAGTAGGGGAAGAGGCCGAGGTAAAGGAAGAGGCCGAGGACGAGGGGTTCGAACTGTTGAAAGAGACATCATTCATCAGCAGGTTGAATCTGAGCCTTGCTCCTCTATTCAACAAATTAGCAATGATATGCCTAACACAAGTCTGCCAATAGATAATGGTGTGCAATCCAAGGAGTATACAAAGGAGACTTCTGCAGCTCATGAGGAAAGTGCTCAATCTTTCCGTAACATTGATCTGAATGCTAACTTAAACGAAAATGGAGACAAAAATGCCAGTGCAGCTGTTGAAGCTCCATTGCCTGAGCCTGCTGACATGGACATTAAACATGAAGAAATTCCAGGCTGGTCCCTATCGGATGCCGACAAGATGGCCATTGACACTATGCAACTGGCAACCCTCGCTAGTAGACTAGAAGAGGATGATGAAGATTATGATGAGGAAGGGTAA 861 0.4576 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKYCVQSYNVFDFLRDIVSRVPDYGHGHGHSETGADDRALSKRRKAAGVEGNESDEEAKRSKMRELGHTSTPSRGRGRGKGRGRGRGVRTVERDIIHQQVESEPCSSIQQISNDMPNTSLPIDNGVQSKEYTKETSAAHEESAQSFRNIDLNANLNENGDKNASAAVEAPLPEPADMDIKHEEIPGWSLSDADKMAIDTMQLATLASRLEEDDEDYDEEG 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1531g00001 286 FunFam dr1-associated corepressor homolog 1 86 - -
Vium1531g00001 286 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vium1531g00001 286 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vium1531g00001 286 MobiDBLite consensus disorder prediction 166 185 - -
Vium1531g00001 286 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 119 - -
Vium1531g00001 286 SUPERFAMILY Histone-fold 4 98 IPR009072 GO:0046982
Vium1531g00001 286 MobiDBLite consensus disorder prediction 90 137 - -
Vium1531g00001 286 MobiDBLite consensus disorder prediction 90 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1531g00001 Vium-Chr1531 18543 23893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1531g00001 1 275 CCAAT-HAP5 Transcription Factor Family AT3G12480 48.789 3.90e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium1531g00001 CBFD_NFYB_HMF 4e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1531g00001 K21752 - gmx:100810093 437.573