Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1530g00002 ATGATTTTCTGTGTGCATGTTAGTACCCTCATATATTTTAACTCTGACTCATGCAGTTTGTTTAGCAGCAAAATGGCATCTGATCTGAGTTCGGGGTTGTCCAAGAAAACTTTTGTATTTGGTTTGAAAGTGTGGGTACTAATGGGAATACTAGTTGGGTTATTCATCATAATCATTCTTGTGGTGCTATCAATATGTCTCACTTTAAGAAAGAAGTTCAGAAGAGTCAAAGGTAAGCTTCCACTCAGCCATGTGTTAGCTGTTTCAGAAGAGATCAAAGAAATTAGAGTTGATCAAGTTTCAGCAAATAATCATCCACAGAATGGTACTTTTATGAGTCTGAATGACAAATTTGGTGAAGGGGAGACTGAAAAGGTTTTGAACCAAACACAGAATGGGGACAATAGTAGTCAATCAGGCTCCTTTAATCATTTAGAACAAGATGGTAATGGCTCTCAATCAGGTGAAGAAAGTGGTGCTAAGGGAATTGCTTCTTATAGGTCTTCTTTGCATCCTATAACCGCACCATCCCCTTTGTCTGGTCTGCCGGAATTCTCACAGCTTGGCTGGGGCCACTGGTTTACATTAAGGGACCTAGAACTTGCTACAAACAGATTTTCAAAAGAAAATGTTATTGGGGAAGGTGGATATGGAATTGTTTATCGTGGTCAATTAATCAATGGGAGTCCTGTGGCCATAAAGAAGCTACTCAATAATTTAGGACAAGCTGAAAAGGAATTCAGAGTGGAGGTTGAGGCTATTGGTCATGTGCGGCATAAGAACTTAGTACGACTTTTGGGCTACTGCATTGAAGGCACACATAGGTTGTTGATATATGAGTATGTTAACAATGGCAATTTAGAGCAGTGGCTTCATGGGGCCATGCGGCAGCATGGTTTTCTTACTTGGGATGCTCGGATAAAAATTCTCCTTGGAACAGCCAAAGCGCTGGCTTATTTGCACGAGGCAATTGAGCCAAAAGTTGTGCATAGAGATATTAAGTCGAGCAATATTCTAATTGATGAGGACTTTAATTCCAAAATATCTGACTTTGGGCTGGCTAAGTTACTTGGTGCTGGAAAAAGTCATATTACAACCAGAGTTATGGGCACTTTTGGATATGTAGCTCCAGAATATGCCAATTCTGGCTTGCTAAACGAGAAGAGTGATGTTTACAGCTTTGGGGTATTGCTCCTTGAAGCAATTACAGGAAGAGACCCCGTGGATTATAGCCGACCAGCAGCCGAGGTAAATTTGGTCGACTGGCTGAAGATGATGGTAGGTTTTCGACGCTCAGAAGAGGTGTTGGATCCCAACATCGAGACCAGGCCATCGACAAGTGCTCTTAAACGAGCCCTCTTGACAGCTCTGAGATGTGTTGATCCAGATGCAGAAAAAAGACCAAGAATGAGCCAAGTCGTCCGCATGCTTGAATCAGAGGAATATCCTATACCACGAGAGGATCGAAGACGCCGGAAGAGTCAGGCCGGAAACATGGAGGTGGAGACTCATTCTGATACAGACAAGAGTGACAATGCAGATTATAAGTCCAATGGCAGAAGGAACCAATGTGTGTAG 1578 0.4233 MIFCVHVSTLIYFNSDSCSLFSSKMASDLSSGLSKKTFVFGLKVWVLMGILVGLFIIIILVVLSICLTLRKKFRRVKGKLPLSHVLAVSEEIKEIRVDQVSANNHPQNGTFMSLNDKFGEGETEKVLNQTQNGDNSSQSGSFNHLEQDGNGSQSGEESGAKGIASYRSSLHPITAPSPLSGLPEFSQLGWGHWFTLRDLELATNRFSKENVIGEGGYGIVYRGQLINGSPVAIKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLIYEYVNNGNLEQWLHGAMRQHGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDEDFNSKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGFRRSEEVLDPNIETRPSTSALKRALLTALRCVDPDAEKRPRMSQVVRMLESEEYPIPREDRRRRKSQAGNMEVETHSDTDKSDNADYKSNGRRNQCV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1530g00002 525 PANTHER OS01G0323000 PROTEIN 28 504 - -
Vium1530g00002 525 SUPERFAMILY Protein kinase-like (PK-like) 190 487 IPR011009 -
Vium1530g00002 525 ProSitePatterns Protein kinases ATP-binding region signature. 212 235 IPR017441 GO:0005524
Vium1530g00002 525 SMART serkin_6 206 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1530g00002 525 FunFam Putative receptor-like serine/threonine-protein kinase 282 493 - -
Vium1530g00002 525 Gene3D Transferase(Phosphotransferase) domain 1 282 494 - -
Vium1530g00002 525 MobiDBLite consensus disorder prediction 126 161 - -
Vium1530g00002 525 MobiDBLite consensus disorder prediction 477 525 - -
Vium1530g00002 525 Gene3D Phosphorylase Kinase; domain 1 186 281 - -
Vium1530g00002 525 FunFam Putative receptor-like protein kinase 188 281 - -
Vium1530g00002 525 MobiDBLite consensus disorder prediction 477 516 - -
Vium1530g00002 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 328 340 IPR008271 GO:0004672|GO:0006468
Vium1530g00002 525 CDD STKc_IRAK 212 478 - -
Vium1530g00002 525 MobiDBLite consensus disorder prediction 126 159 - -
Vium1530g00002 525 ProSiteProfiles Protein kinase domain profile. 206 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1530g00002 525 Pfam Protein kinase domain 207 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1530g00002 Vium-Chr1530 18594 22257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1530g00002 41 480 Trihelix Transcription Factor Family AT1G70460 40.000 1.03e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vium1530g00002 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1530g00002 - - gmx:100818864 903.279