Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1530g00001 ATGGCATCTGATCTGAGTTCGGGGTTGTCCAAGAAAACTTTTGTATTTGGTTTGAAAGTGTGGGTACTAATGGGAATACTAGTTGGGTTATTCATCATAATCATTCTTGTGGTGCTATCAATATGTCTCACTTTAAGAAAGAAGTTCAGAAGAGTCAAAGGTAAGCTTCCACTCAGCCATGTGTTAGCTGTTTCAGAAGAGATCAAAGAAATTAGAGTTGATCAAGTTTCAGCAAATAATCATCCACAGAATGGTACTTTTATGAGTCTGAATGACAAATTTGGTGAAGGGGAGACTGAAAAGGTTTTGAACCAAACACAGAATGGGGACAATAGTAGTCAATCAGGCTCCTTTAATCATTTAGAACAAGATGGTAATGGCTCTCAATCAGGTGAAGAAAGTGGTGCTAAGGGAATTGCTTCTTATAGGTCTTCTTTGCATCCTATAACCGCACCATCCCCTTTGTCTGGTCTGCCGGAATTCTCACAGCTTGGCTGGGGCCACTGGTTTACATTAAGGGACCTAGAACTTGCTACAAACAGATTTTCAAAAGAAAATGTTATTGGGGAAGGTGGATATGGAATTGTTTATCGTGGTCAATTAATCAATGGGAGTCCTGTGGCCATAAAGAAGCTACTCAATAATTTAGGACAAGCTGAAAAGGAATTCAGAGTGGAGGTTGAGGCTATTGGTCATGTGCGGCATAAGAACTTAGTACGACTTTTGGGCTACTGCATTGAAGGCACACATAGGTTGTTGATATATGAGTATGTTAACAATGGCAATTTAGAGCAGTGGCTTCATGGGGCCATGCGGCAGCATGGTTTTCTTACTTGGGATGCTCGGATAAAAATTCTCCTTGGAACAGCCAAAGCGCTGGCTTATTTGCACGAGGCAATTGAGCCAAAAGTTGTGCATAGAGATATTAAGTCGAGCAATATTCTAATTGATGAGGACTTTAATTCCAAAATATCTGACTTTGGGCTGGCTAAGTTACTTGGTGCTGGAAAAAGTCATATTACAACCAGAGTTATGGGCACTTTTGGATATGTAGCTCCAGAATATGCCAATTCTGGCTTGCTAAACGAGAAGAGTGATGTTTACAGCTTTGGGGTATTGCTCCTTGAAGCAATTACAGGAAGAGACCCCGTGGATTATAGCCGACCAGCAGCCGAGGTAAATTTGGTCGACTGGCTGAAGATGATGGTAGGTTTTCGACGCTCAGAAGAGGTGTTGGATCCCAACATCGAGACCAGGCCATCGACAAGTGCTCTTAAACGAGCCCTCTTGACAGCTCTGAGATGTGTTGATCCAGATGCAGAAAAAAGACCAAGAATGAGCCAAGTCGTCCGCATGCTTGAATCAGAGGAATATCCTATACCACGAGAGGATCGAAGACGCCGGAAGAGTCAGGCCGGAAACATGGAGGTGGAGACTCATTCTGATACAGACAAGAGTGACAATGCAGATTATAAGTCCAATGGCAGAAGGAACCAATGTGTGTAG 1506 0.427 MASDLSSGLSKKTFVFGLKVWVLMGILVGLFIIIILVVLSICLTLRKKFRRVKGKLPLSHVLAVSEEIKEIRVDQVSANNHPQNGTFMSLNDKFGEGETEKVLNQTQNGDNSSQSGSFNHLEQDGNGSQSGEESGAKGIASYRSSLHPITAPSPLSGLPEFSQLGWGHWFTLRDLELATNRFSKENVIGEGGYGIVYRGQLINGSPVAIKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLIYEYVNNGNLEQWLHGAMRQHGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDEDFNSKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGFRRSEEVLDPNIETRPSTSALKRALLTALRCVDPDAEKRPRMSQVVRMLESEEYPIPREDRRRRKSQAGNMEVETHSDTDKSDNADYKSNGRRNQCV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1530g00001 501 Gene3D Transferase(Phosphotransferase) domain 1 258 470 - -
Vium1530g00001 501 MobiDBLite consensus disorder prediction 454 492 - -
Vium1530g00001 501 ProSiteProfiles Protein kinase domain profile. 182 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1530g00001 501 MobiDBLite consensus disorder prediction 102 135 - -
Vium1530g00001 501 FunFam Putative receptor-like protein kinase 164 257 - -
Vium1530g00001 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Vium1530g00001 501 CDD STKc_IRAK 188 454 - -
Vium1530g00001 501 Pfam Protein kinase domain 183 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1530g00001 501 Gene3D Phosphorylase Kinase; domain 1 162 257 - -
Vium1530g00001 501 MobiDBLite consensus disorder prediction 454 501 - -
Vium1530g00001 501 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Vium1530g00001 501 PANTHER OS01G0323000 PROTEIN 5 480 - -
Vium1530g00001 501 FunFam Putative receptor-like serine/threonine-protein kinase 258 469 - -
Vium1530g00001 501 SMART serkin_6 182 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1530g00001 501 SUPERFAMILY Protein kinase-like (PK-like) 166 463 IPR011009 -
Vium1530g00001 501 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1530g00001 Vium-Chr1530 18594 24193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1530g00001 17 456 Trihelix Transcription Factor Family AT1G70460 40.000 4.11e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vium1530g00001 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1530g00001 - - gmx:100818864 898.656