Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15304g00001 ATGACTTCTTGGCTGAGAGGCAGGTGCGTCGGGAAGGGCGCGTTTGGAGTTGTCAACGCGGCGGTTTCCACAGCTGATGGTCGGGTATTCGCGGTGAAGTCCGTCGACCGTGGATTGGGGCACCCTCGTCGGCTGGAGGAGTTGGAGAACGAGATTGAGATTTTGAAACGCGTGGCGTCGCCACACGTGGTCGCTTATCTCGGCGACGACGTCACGTTCGAACACGGCGGAACGGCGTCGTTCAGGAACCTTCATCTTGAGTACATGCCAGGTGGCACCGTCGCTGATCTGGACCGCGCTGACGTGGACGAGAGTTTGGTGAGGCGCTACGCGTGGTGCCTAGTGAGCGCACTGCGTGACGTCCACGCGCACGGCTTCGTTCACTGCGACGTCAAGGGGAGGAACGTGCTCCTCTCCGGCAACCGTGCGGCAGCGAAACTCGCCGACTTCGGCTCGGCAGTGGAAGTCGAAGTTCCGCAGGATTTGTTGCCCCGCGGGAGTCCGATGTGGATGGCGCCGGAGGTGGTTCGCCGGGAGCGGCAGGGGCCGGAGTCAGATGTGTGGTCGCTGGGTTGCACGGTGATCGAGATTGTCAACGGGAAACCGCCGTGGGAGGATCACGGTGTGGACACGCTGAGTCGAATCGGTTACTCGGACGAACTGCCGGAGTTTCCAAGCAAACTGTCAGAGCTAGGGAAGGATTTTCTAGAGAAGTGTCTGAGAAGAGAATGGAGAGAGCGGTGGAGCTGCGATCGGCTGCTGCAGCATCCATTTTTGCTTCCCTACGCCGTAGTTGAATCGTCGCCTCGTTGCGTTCTGGACTGGGTTGACTCGGAGTTCGCGGAGGCAGAACATAACGACCTTGAAGAAGAAGGATGGTTAGAATTTAACCGTAATGAAAATTCAGTTAAAAGTAGAATTAGTAAATTAGCAACAGAATCGAGGGTAAATTGGGAAACACAGGGTTGGGAAGCGGTGAGGGAAGTTGAGCTGAACGAAGAATCATGGTCATCGAGAACAACAGGTGAAACCGAAGAAGGGGTTAATTGGGAATTTAGCAATGTGGTGGGAGTAGGGAGTTGTGGGGAATGTTGGAACTGTGAAGGGGTAAATCGGGAAATAGAAGAGTTTGGTGAGGAGTGTAAGAGTGGTGGAGGTTGGGAAAGGGGAGTTTTGATCATTTACAGTTGTAAAACTTTGATACGATGTTATTTGTTGTTGTTAATATATTTAAATACATTATGGTTTTGGATCATTTATGGTGTTTACCTGTGTTTATTGGAAAAGTGTGTAATGCAATCGAGAGAGACAAGAAATTGGGTGGAATGTATAAGAAATTGA 1341 0.5227 MTSWLRGRCVGKGAFGVVNAAVSTADGRVFAVKSVDRGLGHPRRLEELENEIEILKRVASPHVVAYLGDDVTFEHGGTASFRNLHLEYMPGGTVADLDRADVDESLVRRYAWCLVSALRDVHAHGFVHCDVKGRNVLLSGNRAAAKLADFGSAVEVEVPQDLLPRGSPMWMAPEVVRRERQGPESDVWSLGCTVIEIVNGKPPWEDHGVDTLSRIGYSDELPEFPSKLSELGKDFLEKCLRREWRERWSCDRLLQHPFLLPYAVVESSPRCVLDWVDSEFAEAEHNDLEEEGWLEFNRNENSVKSRISKLATESRVNWETQGWEAVREVELNEESWSSRTTGETEEGVNWEFSNVVGVGSCGECWNCEGVNREIEEFGEECKSGGGWERGVLIIYSCKTLIRCYLLLLIYLNTLWFWIIYGVYLCLLEKCVMQSRETRNWVECIRN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15304g00001 446 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 343 - -
Vium15304g00001 446 SMART serkin_6 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15304g00001 446 SUPERFAMILY Protein kinase-like (PK-like) 4 284 IPR011009 -
Vium15304g00001 446 FunFam Serine threonine protein kinase putative 2 311 - -
Vium15304g00001 446 CDD STKc_MAPKKK 3 259 - -
Vium15304g00001 446 Pfam Protein kinase domain 8 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15304g00001 446 ProSiteProfiles Protein kinase domain profile. 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15304g00001 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vium15304g00001 446 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vium15304g00001 446 Gene3D Transferase(Phosphotransferase) domain 1 2 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15304g00001 Vium-Chr15304 10499 12336 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15304g00001 4 344 MAP Kinase Kinase Kinase AT1G07150 56.091 1.21e-123 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium15304g00001 Pkinase 1.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15304g00001 - - var:108336699 603.594