Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15294g00002 ATGGCTTTAGAGCAGGAATTGTCCCTGGGTCAGAATACGAATTCGAATAGGAATCCGAACCCAGTTGATTGCGTGGATGTTCGGGGTGAGGGTGGAGACGAGGGAGGGAAAGCGCCGAGACTGCCTCGGTGGACGAGGCAAGAAATTCTGGTTCTGATACAGGGAAAGAGAGACGCTGAAAACAAGTTCAGGAGGGGCCGAACGGCCGGATTGCCATTAGGGTCGGGTCAGGTGGAGCCCAAATGGGCATCGGTCTCTTCCTACTGCAGAAAGCATGGAGTCAACAGAGGTCCGGTTCAGTGCCGGAAAAGGTGGAGCAATTTGGCCGGAGACTACAAGAAGATCAAAGAATGGGAATCTCAGATAAGAGAGGAGTCGGATTCCTTTTGGGTCATGAGAAACGATTTAAGGAGAGACCGGAAATTGCCCGGATTTTTTGACAAGGAAGTTTATGATATTCTCGATTCAGGCTCCCAAGGTCCGGCGTTGGCTCTCGCTCTTTCATCGCCTCCTTCAATGACAGTAACGGTGTGCAAGGACATGCGCATGGACATGGACACCAAAAGAGGGTATGCACCTGCCCCTTCCTCAGCCTCAGCCCCTGCCCCTGCCCCTGCCCCTGTCCCTGCCCCTGTCCCTGCCCCTGCTGAGCCTGAGGAGCCTCACCTCTACGATAGTAATCGGAGCGTGCCTGTTGAGGATGGTTTGTTTTCAGATTTCGAACAAGATGAAGCCTCTGCCAGTCCCGAGAAGAAGGACATTTTTCCGCCCTCCAACAGGGACTTCCCTGCTCCCATTCCTATATCAGGTGTGACTAACGAGAAACAGTCTACTCCAAATCCAGAAATGGGTTCTACCTCTCAAGGAGAGCGGAAAAGGAAGCGATTATCAACTGACGGAGGGGAGGAAACTTTGCAAATTCATTTAATTGATGTCTTAGAAAGAAATGGCAAGATGCTAAGTGCTCAACTTGAAGCGCAGAATATAAATTTCCAGTTGGATCGTGAGCAGCGGAAAATCAATGGTAGTAATTTGGTTGCCGTGCTGGATAAGCTTGCAGATGCTTTAGGGAGAATCGCTGATAAATTATAG 1092 0.5037 MALEQELSLGQNTNSNRNPNPVDCVDVRGEGGDEGGKAPRLPRWTRQEILVLIQGKRDAENKFRRGRTAGLPLGSGQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREESDSFWVMRNDLRRDRKLPGFFDKEVYDILDSGSQGPALALALSSPPSMTVTVCKDMRMDMDTKRGYAPAPSSASAPAPAPAPVPAPVPAPAEPEEPHLYDSNRSVPVEDGLFSDFEQDEASASPEKKDIFPPSNRDFPAPIPISGVTNEKQSTPNPEMGSTSQGERKRKRLSTDGGEETLQIHLIDVLERNGKMLSAQLEAQNINFQLDREQRKINGSNLVAVLDKLADALGRIADKL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15294g00002 363 ProSiteProfiles Myb-like domain profile. 43 109 IPR001005 -
Vium15294g00002 363 MobiDBLite consensus disorder prediction 198 218 - -
Vium15294g00002 363 MobiDBLite consensus disorder prediction 1 21 - -
Vium15294g00002 363 MobiDBLite consensus disorder prediction 187 300 - -
Vium15294g00002 363 MobiDBLite consensus disorder prediction 270 286 - -
Vium15294g00002 363 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 25 363 - -
Vium15294g00002 363 MobiDBLite consensus disorder prediction 27 41 - -
Vium15294g00002 363 Gene3D - 44 114 - -
Vium15294g00002 363 MobiDBLite consensus disorder prediction 1 41 - -
Vium15294g00002 363 Pfam Myb/SANT-like DNA-binding domain 43 132 IPR044822 -
Vium15294g00002 363 CDD GT1 42 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15294g00002 Vium-Chr15294 7 8481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15294g00002 22 117 Trihelix Transcription Factor Family AT1G76890 26.042 3.22e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium15294g00002 Myb_DNA-bind_4 9.1e-13 CL0123