Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1528g00011 ATGTCCACCCCAATTTTGTTGCTTTCCTTTTGGAAGAGAATATCTCCACTGTGTTGTTATTTTACCCTAGAATTCCAACTTAAAACACTTTCTCTTTCATCTTTCTTTCTCTTTCTATCTATCTATCTATCTGTTATCTTCTCTTCTCTTGCATCTCAGATAGATGATCGCAAGGCCTCTATGGGAAGAGTCATGGAAAAACCAACCCAAGATCTTCTTCACCAGCAGCAACAAGCCCTCAAGTGCCCTCGCTGCGACTCTTCCAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCACAGCCCAGGCACTTCTGCAAAGCCTGCAAGCGATACTGGACCAGAGGTGGAACTCTCAGAAACGTTCCCGTTGGTGGTGGCTGCAGGAAAAACAAGCGTATCAAACGTCCAAACGGTGACGCTTCTTCTAACTCTCCTCCTTCTTCCTCCACTCCTATCTCCAATTCAAATCCTCCTTCACTGCCCCACATCCCTTCTACTTCAACCGCAAACCATATCAATGTAAACCCTTTGTTTTATGGCCTACCCAGTAGTAACGCTTGTGATGTCATGGATGTTCCTTTCCCAAGGTTTAATCTTCAGTCTCAGCTGAGTGCCCTTGGGTTAGGTTTTTCATCCGGGGTTAACGTTATCTCAAACCAACCCAGTGATAACGGCTTTAGTGCTACTACTACCACTACTACTTCGAACACTGACAACTTTCTTTCTGCTTATAATTCCATCTTTGGTTCTTCTTCCTCCTCGACTTGTGCACCCACCACTCCTGTTATGGCTTCCTTGCTGAGTTCCACTCTCCTGCAACAGAAGTTTATCGGCGGCGCTGGGTTGAAGGGTGATCATGTTGGCAACGGTTTCCAGGGTTTGGCACCGCTACAAGGGTTGCAAATGGAAGGGAGTAATAATATTAGCTCAAAAGAAGTGAAAGCCGAAGGACCGAACAGGTTGGAGTTGGAGTGGAGTAATGGTAACAATAACAATGGTGGTGGCGGTGCTTGTCAAAACCAGATGGAGCATGTGGGCTTGTCTGATCCTAATTCGCTTTATTGGAACACTGCAACCAGTTTGAGTGCTTGGAGTGATCAACCAAACTTTGGTCCTTCGGTCACTTCTCTGATCTAG 1143 0.4567 MSTPILLLSFWKRISPLCCYFTLEFQLKTLSLSSFFLFLSIYLSVIFSSLASQIDDRKASMGRVMEKPTQDLLHQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIKRPNGDASSNSPPSSSTPISNSNPPSLPHIPSTSTANHINVNPLFYGLPSSNACDVMDVPFPRFNLQSQLSALGLGFSSGVNVISNQPSDNGFSATTTTTTSNTDNFLSAYNSIFGSSSSSTCAPTTPVMASLLSSTLLQQKFIGGAGLKGDHVGNGFQGLAPLQGLQMEGSNNISSKEVKAEGPNRLELEWSNGNNNNGGGGACQNQMEHVGLSDPNSLYWNTATSLSAWSDQPNFGPSVTSLI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1528g00011 380 MobiDBLite consensus disorder prediction 139 169 - -
Vium1528g00011 380 Pfam Dof domain, zinc finger 78 134 IPR003851 GO:0003677|GO:0006355
Vium1528g00011 380 MobiDBLite consensus disorder prediction 125 169 - -
Vium1528g00011 380 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
Vium1528g00011 380 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
Vium1528g00011 380 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 70 244 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1528g00011 Vium-Chr1528 141956 143884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1528g00011 80 380 C2C2-Dof Transcription Factor Family AT1G28310 40.549 1.15e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium1528g00011 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1528g00011 - - vum:124826825 709.523