Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1528g00010 ATGGAACATCATCAAGCCAGAGAAGAAAATACAAAAATTCATCTTGCAGTTCCTGCTGCACCGCCAAAACCGCAGCACAAATGTCCTCGCTGCAATTCCACCAACACCAAATTCTGCTACTTCAACAACTATAGTCTCTCGCAGCCTCGCCACTTCTGCAAAACGTGTAAAAGGTACTGGACGCAGGGTGGAACCTTCAGGAACATACCCGTTGGTGGTGCTTCCCGTAAGGCCAAACGTGGCAAAACAGATTCTTCACCCTCCAATTCACTCACACAGCCACACTCAGATTTGGTGAACCCTTCTCCGTCACTCACCATGGCTCACTCAACTACCCCTTACTATCAACTTGGCGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGGTATTTATCTTCTCTGGCAACGCTTCATTCTCTGACCCCATCGCAGCCTTTCAATCACTACCTGAACGTTGCGGGCTCTTCTTCTATTTTGCCTCTTCTGTCTGGCTTCAACGCTGCTGCTGCTGCTGCTTCTTTTCCTCCTCGGTTCCATCACGTGGGAATCAGAGAGAGGATGGAATCTCTCTATCCTGCACCACAACGTTTGCTTCCATCAAACGTGTCTGGTGGCAGTGCTGCTGCAGCAGCACAAAGCTTGATTAGTGATGTTTCGAGTACAAACCTTACGGCTGGTTCTGATGTCTCATTTTGGAGTGCTACTATCAACGCCACTTCCATCAGTGGAAACTCTGATCGCAACAATGTCAAAGGCGGTTCTTCTTCCTCTTTGATCCCAAATCATTGGCTTCATCCTCCAGGGTACCGTCCTCCTCAATAA 822 0.4927 MEHHQAREENTKIHLAVPAAPPKPQHKCPRCNSTNTKFCYFNNYSLSQPRHFCKTCKRYWTQGGTFRNIPVGGASRKAKRGKTDSSPSNSLTQPHSDLVNPSPSLTMAHSTTPYYQLGGGGGGGGGGGGYLSSLATLHSLTPSQPFNHYLNVAGSSSILPLLSGFNAAAAAASFPPRFHHVGIRERMESLYPAPQRLLPSNVSGGSAAAAAQSLISDVSSTNLTAGSDVSFWSATINATSISGNSDRNNVKGGSSSSLIPNHWLHPPGYRPPQ 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1528g00010 273 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 106 IPR045174 GO:0003700|GO:0006355
Vium1528g00010 273 MobiDBLite consensus disorder prediction 242 273 - -
Vium1528g00010 273 Pfam Dof domain, zinc finger 25 80 IPR003851 GO:0003677|GO:0006355
Vium1528g00010 273 MobiDBLite consensus disorder prediction 70 103 - -
Vium1528g00010 273 MobiDBLite consensus disorder prediction 242 261 - -
Vium1528g00010 273 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
Vium1528g00010 273 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Vium1528g00010 273 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1528g00010 Vium-Chr1528 121183 122103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1528g00010 18 91 C2C2-Dof Transcription Factor Family AT1G51700 64.865 1.98e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium1528g00010 zf-Dof 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1528g00010 - - gmx:100814555 290.041