LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1528g00008	ATGAAGTTTAACATAGCAAATCCCACCACTGGATGTCAGAAGAAGCTGGAAATCGATGACGACCAGAAGCTTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTCCTTGGTGATGCCCTGGGCGAGGAATTTAAAGGCTATGTTTTTAAAATCACTGGTGGGTGTGACAAACAAGGCTTCCCAATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTCCGACTCTTGCTCCATAGAGGAACCCCATGTTTCCGCGGATACGGGAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGGTGCATTGTTAGCCCTGACCTATCTGTTTTGAACTTAGTTATTGTGAAGAAGGGCGATAGTGATTTGCCAGGTCTCACCGATGTTGAAAAGCCAAGGATGAGGGGTCCAAAAAGAGCTTCAAAAATCCGAAAGCTGTTCAACCTGTCCAAGGATGATGATGTGAGAAAGTATGTAAACACATACCGTCGGACCTTTACGACAAAAGCTGGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGACTCTCCAAAGGAAGCGAGCAAGGATTGCTGACAAGAAGAAAAGAATTGCTAAGGCGAAGTCAGAAGCAGCAGAGTATCAGAAACTCCTTGCTTCTAGATTGAAGGAGCAGAGGGATCGCCGGAGTGAAAGCTTGGCTAAGCGTAGATCCAAACTTTCTAGTGCTTCCAAACCCACTGTTACTGCATAG	750	0.472	MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDSDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKRRSKLSSASKPTVTA	249

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1528g00008	249	Coils	Coil	189	216	-	-
	Vium1528g00008	249	MobiDBLite	consensus disorder prediction	218	249	-	-
	Vium1528g00008	249	PIRSF	RPS6e	1	249	IPR014401	GO:0003735\|GO:0005840\|GO:0006412
	Vium1528g00008	249	Pfam	Ribosomal protein S6e	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Vium1528g00008	249	MobiDBLite	consensus disorder prediction	218	237	-	-
	Vium1528g00008	249	Gene3D	-	133	234	-	-
	Vium1528g00008	249	ProSitePatterns	Ribosomal protein S6e signature.	52	63	IPR018282	GO:0003735\|GO:0005840\|GO:0006412
	Vium1528g00008	249	PANTHER	40S RIBOSOMAL PROTEIN S6	1	240	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Vium1528g00008	249	SMART	Ribosomal_S6e_2	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1528g00008	Vium-Chr1528	108647	111012	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1528g00008	1	249	Cytoplasmic Ribosomal Protein Gene Family	AT5G10360	72.289	2.88e-120	339

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1528g00008	K02991		-	gmx:100786559	431.409