Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1528g00006 ATGGACAACTTTCCTGTGCCGTTTTCAGCGGCCACCACCAACCCATTAATCCCTAATGTCTCTGGCACTACCTCTTTCTCTTCGAACGTAATAATCCCAGCTGAACAAAACATGGCAGAACTAACAAATTTTAACTTCCCTATTGACAAAACTGGAGAAATTGGCTTTCCTAATCCTTATTTCGGTCCATATGATCAAAACATGCACTTCCAACAAATGAATCCATATCCTTTGCATACCCTTCCAACACCACAACCAAATGCAATTTATGGACCACCAAATTCTGAAGTTCAAACCTCTGTGGGACCATTGACTAGCAAAGTTGCTAGGGACAAAAGGAAAAAAGTAAGACAGAAGAGTAAGAATGTTGCTCCTACGGCTCCTTTGGTTCCAACCAAAGGAACAAAGGAAAAACCTGTTTCTGGACGAGGAAAACTCACTATCAACCTAGATAGAACTACCATTGTTTTTTGCAGCCCAGATGGGAAGAAGTTAGAGGAAGTTTTCACAAAGCAGTTGAAGAATAGTGACGTTAGTGTCCTAGGTCGCATTGTGCTCCCAAAGAGGGAGGTTGAGGCGAAGCTTCCACCATTGACAGACAAGGAAGGAAAGGATATCATAGTCAAGGATGTTTATTCTGCGAAGATATGGACCTTGAAATACAAGTATTGGTCTAATAACAGAAGTAGAATGTATGTTCTTGAAAATGCAGGGGATCTAGTGAACCATTATGAACTACGACTGGGAGATTATATAACCATTTTCACGGACGAAATGAAAAATCTGTATGTGTGGGCTAGAAAAATGAGAAATCTAGAAACACCGGTGTGCTCGTCAAACATGGAAAGCTCGAAAACATGCGAGACAGACAACCTTAACGACATGAAGCAATCTACAAATGAAGATGCATATTTGGAATTTTTGACAAAGCTGAACCCTAAGAAAGACGTTGAAGAAGCTAAAAAGCTTTTGACTTCATTCAATGGTGGTGGAAGTTCTTCAAGTGGAGCAAAATCAGATATGAATATAGCACAGCATGATCTGTCGAACACTGCTGGGAAAGGGGCACCAAACCAAACAACTGCAGAAGCCACACCAACAGCACCAACAACACCCCTTGATGGCAATAACATGCCGATAAGTGATGAAGATGTCTATGGGGGCCTTGACAATATCTTCGAAATTGAGAATAGTTCATGGTTTTGA 1206 0.4104 MDNFPVPFSAATTNPLIPNVSGTTSFSSNVIIPAEQNMAELTNFNFPIDKTGEIGFPNPYFGPYDQNMHFQQMNPYPLHTLPTPQPNAIYGPPNSEVQTSVGPLTSKVARDKRKKVRQKSKNVAPTAPLVPTKGTKEKPVSGRGKLTINLDRTTIVFCSPDGKKLEEVFTKQLKNSDVSVLGRIVLPKREVEAKLPPLTDKEGKDIIVKDVYSAKIWTLKYKYWSNNRSRMYVLENAGDLVNHYELRLGDYITIFTDEMKNLYVWARKMRNLETPVCSSNMESSKTCETDNLNDMKQSTNEDAYLEFLTKLNPKKDVEEAKKLLTSFNGGGSSSSGAKSDMNIAQHDLSNTAGKGAPNQTTAEATPTAPTTPLDGNNMPISDEDVYGGLDNIFEIENSSWF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1528g00006 401 Gene3D - 158 275 IPR015300 -
Vium1528g00006 401 MobiDBLite consensus disorder prediction 348 377 - -
Vium1528g00006 401 MobiDBLite consensus disorder prediction 110 143 - -
Vium1528g00006 401 Pfam B3 DNA binding domain 169 266 IPR003340 GO:0003677
Vium1528g00006 401 SUPERFAMILY DNA-binding pseudobarrel domain 168 274 IPR015300 -
Vium1528g00006 401 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 132 322 IPR044800 GO:0003700
Vium1528g00006 401 CDD B3_DNA 169 264 IPR003340 GO:0003677
Vium1528g00006 401 ProSiteProfiles B3 DNA-binding domain profile. 169 270 IPR003340 GO:0003677
Vium1528g00006 401 MobiDBLite consensus disorder prediction 348 379 - -
Vium1528g00006 401 SMART B3_2 169 270 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1528g00006 Vium-Chr1528 78783 81231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1528g00006 161 263 B3 DNA Binding Superfamily AT1G28300 58.252 4.40e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium1528g00006 B3 2.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1528g00006 K09287 - gmx:106797573 267.314