Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1528g00002 ATGATGTTTGTTCTAGCAATCACAGGAGTGATCTTCTACAAGAAGCATAACCAAGCAAAAAGAAAAGCAAATGAGGCTAAAATTAATAAGAGAAAAGAAGACTTAAGTGTGAAAGCTAGTGCTTTATCATCAAGAATCTTCATCGGTAGAGAGATAAGAAAGGCAACGAACGATTTCTCCCGAGAAAATTTGATTGGAATTGGTGGATTCGATGAAGTGTTCAAGGGGACATTCGATGATGGAACCGTGTTTTCCATCAAGCGTGCGAAGCTTGGAAGCACCGAAGGCATTGATCAGATGCGAAACGAGGTTCGAATTCTGTGCCAAGTAAACCACAGAAGCTTGGTGAAACTCCTTGGTTGTTGCTTGGAACTTGAACACCCTTTGCTAATATACGAGTACGTTTCAAATGGGACCCCTTTTGATTACCTTCATAGCCATTCTTGTGGCACAAGGGAACCCCTGAAATTGCACCAAAGACTCAAAATTGCACACCAAACAGTCGAAGGGATTTCATATCAACATCAAAGCTTTGCAGAAGTTGTGACCACAAGGAGTAGTAATGGGGTACTACATCACCTTGCGGCAAATTCTGACGCGCCTATGCTCACAAGAGCCTTTGCCACCAAAGCCAATGCGCCTCCGTGCAACACCTTGAAGGACTTCACCATGTGCAAAATTAAACCATAA 690 0.4275 MMFVLAITGVIFYKKHNQAKRKANEAKINKRKEDLSVKASALSSRIFIGREIRKATNDFSRENLIGIGGFDEVFKGTFDDGTVFSIKRAKLGSTEGIDQMRNEVRILCQVNHRSLVKLLGCCLELEHPLLIYEYVSNGTPFDYLHSHSCGTREPLKLHQRLKIAHQTVEGISYQHQSFAEVVTTRSSNGVLHHLAANSDAPMLTRAFATKANAPPCNTLKDFTMCKIKP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1528g00002 229 Gene3D Transferase(Phosphotransferase) domain 1 45 223 - -
Vium1528g00002 229 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 10 182 IPR045274 GO:0007166
Vium1528g00002 229 Pfam Protein tyrosine and serine/threonine kinase 62 176 IPR001245 GO:0004672|GO:0006468
Vium1528g00002 229 ProSiteProfiles Protein kinase domain profile. 59 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1528g00002 229 SUPERFAMILY Protein kinase-like (PK-like) 34 192 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1528g00002 Vium-Chr1528 47907 48707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1528g00002 5 191 Receptor kinase-like Gene Family AT5G02070 54.167 1.22e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium1528g00002 PK_Tyr_Ser-Thr 5e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1528g00002 - - vum:124826816 462.225