Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15278g00002 ATGAAGAGTGAATTAGAGTTGCCACCAGGGTTCAGGTTTCACCCCACGGATGATGAGTTGGTGAACCATTATCTTTGTCGGAAATGCGCTGGTCAACCAATTGCTGTTCCTATCATCAAAGAGGTCGATTTGTACAAGTTTGATCCATGGCAGCTTCCAGAAATCGGATTTTACGGTGAGAAAGAATGGTACTTTTTTTCTCCTCGGGACCGCAAATACCCCAACGGCTCACGGCCGAATCGGGCCGCCGGAAGTGGGTACTGGAAGGCCACCGGCGCCGATAAACCGATCGGAAAACCGAAGGCGCTTGGGATAAAGAAAGCTCTGGTATTTTACTCGGGAAAAGCCCCCAAAGGAGAGAAAACCAATTGGATCATGCACGAATATCGGCTGGCCAATGTTGACCGATCAGCCTCCAAGAAAAATAACAACCTGAGGCTTGACGATTGGGTGTTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAACACGGGGGCATCGAAATCGGAGACTGAGGTGGTTTATAATTTCGAACACGAGACGAAGCCGGTGATTGAGAAGCTTGGGAACGAGCAATTGTTTATGGATAGTTCAGATTCGATGCAGAGGTTGCAGAGTGAGTCGAGCGGTTCAGAGCAGGTGGTTTCGCCGGACGTGAGGTGGGAGAGAGAGGTGCAGAGCCACCCGAAATGGAATGACATAGGCCTACATCTTGAAAACGCGTTTGATTTTCAATACAATTACTTTGACGGCAATAACCTTTCGGTTGATGATCCTTTTGGGAGTGTTGAGTACCAAATGGGCCACGTCTCCCCCTTGCAGGACGTGCTCATGGAAGCCCTATTGATGTGA 861 0.4843 MKSELELPPGFRFHPTDDELVNHYLCRKCAGQPIAVPIIKEVDLYKFDPWQLPEIGFYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYSGKAPKGEKTNWIMHEYRLANVDRSASKKNNNLRLDDWVLCRIYNKKGKIEKYNTGASKSETEVVYNFEHETKPVIEKLGNEQLFMDSSDSMQRLQSESSGSEQVVSPDVRWEREVQSHPKWNDIGLHLENAFDFQYNYFDGNNLSVDDPFGSVEYQMGHVSPLQDVLMEALLM 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15278g00002 286 MobiDBLite consensus disorder prediction 202 221 - -
Vium15278g00002 286 MobiDBLite consensus disorder prediction 202 218 - -
Vium15278g00002 286 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Vium15278g00002 286 Gene3D NAC domain 16 164 IPR036093 GO:0003677|GO:0006355
Vium15278g00002 286 FunFam NAC transcription factor 16 162 - -
Vium15278g00002 286 PANTHER NAC TRANSCRIPTION FACTOR 56 7 201 - -
Vium15278g00002 286 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Vium15278g00002 286 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15278g00002 Vium-Chr15278 6359 7982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15278g00002 1 281 NAC Transcription Factor Family AT1G01720 61.224 1.07e-118 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium15278g00002 NAM 6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15278g00002 - - gmx:100814504 495.352