Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1526g00022 ATGTCACCACAGTTTCATATGCTGTTACCACTTCATTTTAACATGTCTTCTTCCTCTCCACCTTCCTGGGTCACTTCACCTTCATGTTCCACTCTTGACATCGATTCATCTTCACCTACTGCTTTTCTCACTGTTCAGTGGTTAAGGTTTCTTCTTCTATCACCGTGCCCTCAACGAATTATTCTATCTGCTGTTGATTTTATCTTCTTGCTCATTGTCTTAGCCTTTTCAGCTGTTAAACTCTATTATAGATTCACTTCCCGTCACACCTCTTCCTCCTCTGTTACTAAACCCCTTTTGCAGGAGAAACGCTCTCACTATAGAGTCACCTTCTGGTTCAAACTGACCTTCTTGGTGACCACCCTTTTGGTTGCAGCTTATGCTGTTCTTGGCGTATTGGCCTTTCAAACCAGTCTTTCTTCATGGATAGTCATAGAGGCACTCTTTCGGCTCTTTCAAGCTGTGGCCAATATAGTGGTTGTGGTCCTATTGGTTCACGAGAACAAGTTCAAAGCTTCGGAGCACCCTTTATCGCTGAGAATGTATTGGATTGCAAACATGGTGGTTTCATGCCTTTTTGCCATTTCGGCTGTTGTTCGCTTTGTGGTTGTGGATGAAGCGAGGTTGGAGCTTAGTTTGAGAGTGGATGACGTGTTTTCTTTGGTTAATCTCCCATTTTCTGCGTTCCTTTTCGTTGTAGCAATGAAAGGAGTAACGGGGATTCGGGTGATTAGAAATTCTGATGAAGTGACAGCATATCAGAGCCTTTCCAATGAGAGAAATTTGAGTCCTTATGCTCATTCTTCGATTTTTTCCAAAACAGTGTGGCTTTGGATGAACCCTTTGCTGAAGAAAGGGTACCAAACACCCCTCAAGCTCGATGATGTGCCTTCTCTTCCTCTGGATTTCCGAGCAGAAAAGATGTCAGAGCTTTTCCAAAGCAATTGGCCGAAGGAAGAGGAGAACAGCAAGCACCCGGTTGGTGTCACCTTGTTTAGATGCTTTTGGAAGCGCATAGCTTTCACTGGCTTCCTTGCAGTTATAAGACTTGCGGTTATGTACGTTGGTCCAATGCTTATTCAGAGTTTCGTTGACTTCAGCTCAAGGAAAGACAGCACCCCCCTTGAAGGACTTATTCTTATTCTGATCCTGTTTTGTGCAAAATCAATTGAGGTCCTCACTGTGCACCAATTCAACTTCAACTCTCAGAAACTAGGCATGTTAATCCGTTCCAGCATCATAACTTCCGTGTACAAGAAGGGTTTGAGGCTGTCAAGTTCTTCAAGGCAGGCTCATGGCACTGGCCAGATTGTGAACCACATGGCCGTTGATGCACAACAGCTCTCAGATTTGATGATGCAGTTTCATCCCATATGGTTGATGCCACTGCAAGTAACTGCAGCTTTGGCACTTATCTACAACAGTATAGGCGTGTCAGCTCTCGCAGCGCTGCTTGGAGCCAGTTTGGTGTTTGTTTTCACTCTCATTCGCACCAAGAAGAGCAACACATTCCAGTTCAGGATAATGAAGAGCCGTGACCTGAGGATGAAGGCCACGAATGAGTTGCTTAACAACATGCGTGTCATCAAGTTCCAAGCGTGGGAGGAGTACTTTGGCAACAAGATTCAGCAGTTTCGCGAAGCCGAACACGGTTGGATTGGAAAGTTCTTGTACTACTTTGCCATTAACATGGGAATTCTGAGCACTGCTCCTTTGTTCGTATGTGTTCTCACATTTGGAGCTTCTGTTCTTCAGGGTGTTCCTCTGAACAGTGGCACAGTGTTCACAATCACTTCAGTGATCAAGATTTTGCAAGAGCCTGTGAGGACCTTCCCTCAGGCTCTCATCTTGATTTCCCAAGCGATGATATCTCTTGGGAGGTTGGATGAGTTCCTGATGAGCAAGGAAACGGATGAGGGTGCAGTGGAGAGATTGGATGGATGTGATGGTGACACCGCTGTGGAGATAAAAAACGGAGAATTCTCCTGGGATGCTGCGGATGCAAATGTGGCTCTGAAAGTTGAAGACTTGGAGATCAAGAGAGGAGAACATGCTGCTGTTGTGGGAACAGTTGGGTCAGGCAAGTCTTCGTTACTGGCTTCTTTGTTAGGGGAAATGATCAAGATATCAGGAAAGGTTAGAGTTTGTGGGTCAATAGCCTATGTGGCACAGACATCATGGATTCAGAATGCAAGCATCCAAGACAACGTATTGTTTGGTTTACCAATGAACAGAGAGAAGTACGAAGAAGCTATAAGAGTGTGTTGCCTAGAAAAGGATCTTGAAATGATGGAATATGGAGACCAAACTGAGATTGGAGAAAGGGGTATTAACCTCAGTGGTGGCCAGAAGCAACGTATACAACTTGCTAGAGCTGTATACCAAGACTGTGACATCTATCTCCTTGATGATGTATTCAGTGCTGTTGATGCACAAACTGGGTCATTCATTTTCAAGGAATGTATCATGGGGGCTCTAAAAAACAAGACCATTTTACTTGTAACCCACCAAGTTGACTTCTTGCATAATGTTGACTGTATTATGGTGATGAAAGAAGGGAGAATCGTGCAAAGTGGGAAGTATGATGAACTTCTCAATGCAGGCCTGGATTTTGGTGCACTTGTGGCTGCTCATGAATCCTCTATGGAGATTGCAGAGTCTAGCGATAAAGGTGGTGATGATTCGATTCAGTCTTCGAAACTGGCTCGAATCCCTTCAAAAGAAAAGGAAAAACCAGGTGAAAAGCAACCTCAAAATCAGGCTAAGTCAGCTAACACCTCTGCTAAGCTCATTGAAGATGAGGAAAGAGAAACTGGTCGTGTGAACCTTAAAGTGTACAAACACTACTTCACTGAAGCATTTGGGTGGTGGGGTGTTGTACTGATGCTGGCATTGTCTATAGCATGGATGTTGTCCTTCTTGGCGGGTGATTACTGGCTAGCAATTGGAACTGCAGAAGGCACTAACTTTGCTCCTTCTACATTCATCACTGTCTATGCTTGCATAGCAGTTGGTGTAGCTGTTGTTGTGATGACAAGATCAATCTTATTTACTTATTGGGGTCTGAAGACATCTCAAAGCTTCTTCGTTGGACTGCTTCAAAGCATCCTGCATGCACCAATGTCATTCTTTGACACCACTCCCTCTGGCAGAATTTTGAGTCGTGTATCCACCGATATACTTTGGCTTGACGTATCAATTCCAATGATAGTGAATTTCGTAATGGTTTCATACTTCTCAGTGATCAGCATCCTCCTTGTAACATGCCAAAATGCTTGGGAAACGGTCTTCCTCTTAATCCCACTGTTCTATTTTAATAACTGGTATCGGAAATATTACCTTGCATCTTCTCGGGAATTGACTCGCCTTGATTCTATCACCAAAGCTCCTGTGATTCACCACTTTTCAGAATCCATTGCTGGTGTTATGACCATTCGTGGCTTCGGAAAACAGAACGCATTTTGCCAAGAAAATATTGACAAAGTCAATGCTAGTCTGAGAATGGATTTCCACAACAATGGGGCCAATGAATGGTTTAGTTTTCGCTTGGACTACATGGGAGTGGTTTTCCTTAGCTTTAGCACTGTTTTTATGATCTTTCTCCCAAGTGCTATCGTGAGGCCAGAATATGTTGGTATGTCTTTGTCCTATGGTTTAGCACTCAGCAGTATTTTGTCATTGACTATAACATTGACTTGCAATGTCGAGAACAAAATGGTTTCAGTCGAGAGAATAAAGCAGTTCACCAACCTTCCCTCAGAAGCGCCATGGAAAATGGCTAATAGCTCTCCTCCTAAGAATTGGCCCAGCCATGGCTGCATTGAGTTAAACAATTTGCAGGTTCGGTATCGGCCAAATACTCCTCTGATTCTCAAAGGAGTCTCTCTCACCATTCAAGGAGGAGAAAAGATTGGTGTTGTTGGTCGAACAGGGAGTGGGAAATCAACCCTCATTCAAGTGTTATTTAGGTTGATTGAGCCTTCAGCTGGGAAAATAATTGTTGATGGGATTAACATTTGTACTGTTGGCCTTCATGATCTGAGATCTCGATTTGGAATTATCCCTCAAGATCCTGTTCTCTTTCAAGGAACAGTACGGAGTAACATTGATCCTCTTGGACTGTATTCAGAAGAAGAAATCTGGAAGAGCCTAGAACGTTGCCAACTGAAAGATGTGGTGGCTGCAAAACCTGAGAAACTTGAGGCTTCAGTGGTGGATGGTGGAGACAATTGGAGTGTGGGGCAAAGACAGCTTCTGTGCTTGGGAAGGATCATGCTAAAACGCAGCAAAATACTGTTCATGGATGAGGCAACAGCATCTGTTGATTCACAAACTGATGCTGTAATACAGAAAATCATCAGAGAGGATTTTGCAGACCGTACAATTATCAGCATTGCTCATAGAATACCTACAGTCATGGACTGTGACAAAGTTTTAGTCATTGATGCAGGGCTTTCAAAAGAATACGACAAGCCATCACGTTTGCTAGAAAGGCCTTCACTTTTTGCAGCATTGGTTAAGGAGTACTCCAATAGATCTGCATAA 4545 0.4365 MSPQFHMLLPLHFNMSSSSPPSWVTSPSCSTLDIDSSSPTAFLTVQWLRFLLLSPCPQRIILSAVDFIFLLIVLAFSAVKLYYRFTSRHTSSSSVTKPLLQEKRSHYRVTFWFKLTFLVTTLLVAAYAVLGVLAFQTSLSSWIVIEALFRLFQAVANIVVVVLLVHENKFKASEHPLSLRMYWIANMVVSCLFAISAVVRFVVVDEARLELSLRVDDVFSLVNLPFSAFLFVVAMKGVTGIRVIRNSDEVTAYQSLSNERNLSPYAHSSIFSKTVWLWMNPLLKKGYQTPLKLDDVPSLPLDFRAEKMSELFQSNWPKEEENSKHPVGVTLFRCFWKRIAFTGFLAVIRLAVMYVGPMLIQSFVDFSSRKDSTPLEGLILILILFCAKSIEVLTVHQFNFNSQKLGMLIRSSIITSVYKKGLRLSSSSRQAHGTGQIVNHMAVDAQQLSDLMMQFHPIWLMPLQVTAALALIYNSIGVSALAALLGASLVFVFTLIRTKKSNTFQFRIMKSRDLRMKATNELLNNMRVIKFQAWEEYFGNKIQQFREAEHGWIGKFLYYFAINMGILSTAPLFVCVLTFGASVLQGVPLNSGTVFTITSVIKILQEPVRTFPQALILISQAMISLGRLDEFLMSKETDEGAVERLDGCDGDTAVEIKNGEFSWDAADANVALKVEDLEIKRGEHAAVVGTVGSGKSSLLASLLGEMIKISGKVRVCGSIAYVAQTSWIQNASIQDNVLFGLPMNREKYEEAIRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAQTGSFIFKECIMGALKNKTILLVTHQVDFLHNVDCIMVMKEGRIVQSGKYDELLNAGLDFGALVAAHESSMEIAESSDKGGDDSIQSSKLARIPSKEKEKPGEKQPQNQAKSANTSAKLIEDEERETGRVNLKVYKHYFTEAFGWWGVVLMLALSIAWMLSFLAGDYWLAIGTAEGTNFAPSTFITVYACIAVGVAVVVMTRSILFTYWGLKTSQSFFVGLLQSILHAPMSFFDTTPSGRILSRVSTDILWLDVSIPMIVNFVMVSYFSVISILLVTCQNAWETVFLLIPLFYFNNWYRKYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRGFGKQNAFCQENIDKVNASLRMDFHNNGANEWFSFRLDYMGVVFLSFSTVFMIFLPSAIVRPEYVGMSLSYGLALSSILSLTITLTCNVENKMVSVERIKQFTNLPSEAPWKMANSSPPKNWPSHGCIELNNLQVRYRPNTPLILKGVSLTIQGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKIIVDGINICTVGLHDLRSRFGIIPQDPVLFQGTVRSNIDPLGLYSEEEIWKSLERCQLKDVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDAVIQKIIREDFADRTIISIAHRIPTVMDCDKVLVIDAGLSKEYDKPSRLLERPSLFAALVKEYSNRSA 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1526g00022 1514 SUPERFAMILY ABC transporter transmembrane region 956 1254 IPR036640 GO:0005524|GO:0016020
Vium1526g00022 1514 FunFam ABC transporter C family member 10 323 636 - -
Vium1526g00022 1514 FunFam ABC transporter C family member 3 1257 1508 - -
Vium1526g00022 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1274 1508 IPR003439 GO:0005524
Vium1526g00022 1514 CDD ABC_6TM_ABCC_D2 959 1249 IPR044726 GO:0140359
Vium1526g00022 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 956 1237 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1526g00022 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1264 1507 IPR027417 -
Vium1526g00022 1514 MobiDBLite consensus disorder prediction 903 931 - -
Vium1526g00022 1514 Gene3D - 635 899 IPR027417 -
Vium1526g00022 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 654 877 IPR003439 GO:0005524
Vium1526g00022 1514 FunFam ABC transporter C family member 5 922 1255 - -
Vium1526g00022 1514 CDD ABC_6TM_ABCC_D1 341 628 IPR044746 GO:0140359
Vium1526g00022 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 340 620 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1526g00022 1514 Gene3D - 1257 1508 IPR027417 -
Vium1526g00022 1514 CDD ABCC_MRP_domain1 654 854 - -
Vium1526g00022 1514 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 266 1510 - -
Vium1526g00022 1514 Gene3D ABC transporter type 1, transmembrane domain 326 634 IPR036640 GO:0005524|GO:0016020
Vium1526g00022 1514 Gene3D ABC transporter type 1, transmembrane domain 922 1255 IPR036640 GO:0005524|GO:0016020
Vium1526g00022 1514 CDD ABCC_MRP_domain2 1272 1492 - -
Vium1526g00022 1514 Pfam ABC transporter 1291 1439 IPR003439 GO:0005524
Vium1526g00022 1514 FunFam ABC transporter C family member 4 637 895 - -
Vium1526g00022 1514 Pfam ABC transporter transmembrane region 974 1201 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1526g00022 1514 Pfam ABC transporter transmembrane region 341 608 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1526g00022 1514 SMART AAA_5 1300 1485 IPR003593 GO:0016887
Vium1526g00022 1514 SMART AAA_5 681 854 IPR003593 GO:0016887
Vium1526g00022 1514 Pfam ABC transporter 676 805 IPR003439 GO:0005524
Vium1526g00022 1514 SUPERFAMILY ABC transporter transmembrane region 331 628 IPR036640 GO:0005524|GO:0016020
Vium1526g00022 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 873 IPR027417 -
Vium1526g00022 1514 ProSitePatterns ABC transporters family signature. 779 793 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1526g00022 Vium-Chr1526 186781 193462 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1526g00022 635 888 Calmodulin-binding Proteins AT2G36910 31.387 4.01e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1526g00022 - K05665 vra:106762025 2746.07