Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1526g00020 ATGCCGCAGGGCAATGCCGCCGCCGCCGCTCTGTTAGACCACGGCGGCGATGCTGGAGACGCCGTCATGGCGCGGTGGCTCCAGTCCGCCGGCTTGCAGCATCTCGCCTCTCCTCTAGCTTCTACCGCCATCGATCATCGCCTCCTCCCCAACCTTCTCATGCAGGGTTATGTAGCACAGTCTGCTGAGGAGAAGCAGAGGCTTTTGAAGTTGATGAGAAACCTCAATTTTAATGGGGAGTCTGGTTCAGAGCCATATACGCCCACCGCCCAATCTTTAGGTGGAGTGGCTGGGTCGGATGGGTTTTATTCTCCTGAGTTCAGGGGCGATTTTGGAGCCGGGCTTTTGGATCTTCATGCTATGGACGATACAGAGCTTTTGTCTGAGCATGTAGTTTCAGAACCTTTTGAGCCATCGCCTTTCATGCCTGGAGATGCTAGAGTATTTGAAGACGATTTTTATCCAATTAACAACAAACTGGAAAGTGGGGAAGCAGATGCTGACACATCAATTTCCGTACCAATCAATGAAAAAGAGTATAGCACAAGGGAAAACAGTGTTGCTAAAATTAGAGTTGTGGTACGCAAAAGACCATTAAACAAGAAGGAGCTAGCTAAGAAGGAGGATGATATTGTAACTGTATCTGACAATGCATATTTGACAGTCCATGAACCCAAACTAAAGGTTGATTTGACAGCTTATGTGGAGAAGCATGAGTTTTGTTTTGATGCTGTGCTTGATGAGCATGTTTCCAATGATGAAGTATACCGAACTACTGTTGAACCAATTATTCCTACAATTTTCGAGCGAACCAAAGCTACCTGTTTCGCTTATGGTCAGACAGGAAGTGGCAAAACATACACAATGCAACCCTTACCACTCAGAGCTGCTGAAGACCTTGTTCGACAATTGCATCAGCCAGTTTACCGGAACCAGAGATTTAAATTGTGGCTCAGCTATTTTGAGATATATGGAGGAAAGCTTTATGATCTTCTTAGTGAAAGAAAGAAACTTTGTATGAGGGAAGATGGACGACAGCAGGTTTGCATTGTAGGACTGCAAGAATTTGAAGTTTCTGATGTGCAAATTGTCAAAGAATTCATTGAAAGGGGAAATGCTGCAAGAAGTACAGGATCCACTGGTGCAAATGAGGAGTCCTCCAGGTCACATGCTATCTTACAACTGGTTGTAAAGAAACACAATGAAGTGAAAGAGAGTAAGCGAAACAATGATGGGAATGAGGCAAGAAGTGGGAAGGTTGTGGGGAAGATATCTTTTATTGATCTTGCTGGAAGTGAACGAGGTGCTGACACTACTGATAATGATCGTCAGACACGGATTGAAGGAGCGGAAATCAACAAGAGCCTTTTGGCTTTGAAGGAGTGCATCCGTGCTTTAGACAATGATCAAATTCATATTCCATTTCGGGGAAGTAAACTCACAGAAGTGCTTCGGGACTCCTTTGTCGGTAACTCAAAGACTGTAATGATCTCCTGTATATCTCCGGGTGCTGGATCTTGTGAACACACGCTTAATACCTTGAGATATGCAGATCGAGTTAAAAGTCTGTCCAAAAGTGGGAATCCTAGAAAAGACCAGGTTCTGAATCCTGCTCCACAAACCAATAAGGAGATTTCATCCACATCATCTATTCCAGCTAGTGCTGGTGCAGAGGATTTTATCCATCAACGTCAAGAGAAAACAATGGACATAGGCAGGAAATTTGTTGAAAGGGAAAATTCTTCGTACAGCTCTGCTGCTACTGCTGTTGACAAACAGCCGTTAAGTTTTTCTTCAAGTTATCTATCAAATGGGCGAGAGGAGAAAGGCTTGCCTTCTGCTTCATTGGACCGGGATAGGTTTGAACTGAAGAACTCGTATGGTGACTCCACCAGTCAAAAGATGAACTCTTACTCACAAATTGATACAGGTGAGAAATTGCAAAAGGTGTCTCCGCCACGCAGAAAAGGGTCTAAGGATGAAAAATCTGAAAGGCCTGCAAATTGGATGAAAAGGGATGCCAATGGTTCTGATCCCTTCACTACAAGCTCCAAGCAGCAGAGCACGGGGAACTATAGCACTGTGTCTAAGGATGAAAAGTCTGATAGGCCTTCAAACTGGATGAAAAGGGATTCCAGCAGTTCTGATCTTTTCACTACAAGCTCCAAACAGCAGAGCACAGGGAATAATGTATCTAAGGATGAAAAATCTGAAAGGCCAGCAAACTGGATGAAAAGGGATGCCAGCAACTCTGGTATGTTCTCTACAAGCTCCAAGCAGCCGAGCACAGGGAACTATAACAATATTACGACTGGATCCAGGCCTTATGAAGGAGAATCCTCTCCTAACGGGAATATCAATGCAGTACTTGAGGAGGAAGAAGCACTCATTGCTGCTCATAGGAAGGAAATTGAGGATACAATGGAGATTGTTCGTGAAGAAATGAAACTCCTGGCAGAAGTGGACCAACCGGGAAGCCTTATTGACAACTATGTAACCCAATTGAGTTTTGTGCTTTCTCGCAAAGCAGCAGGTCTGGTGGGTCTTCAAGCTCGTCTTGCAAGATTCCAACATCGACTAAAAGAGCAGGAGATTCTAAGTAGAAAAAGAGTACCGCGTCAGTAA 2625 0.445 MPQGNAAAAALLDHGGDAGDAVMARWLQSAGLQHLASPLASTAIDHRLLPNLLMQGYVAQSAEEKQRLLKLMRNLNFNGESGSEPYTPTAQSLGGVAGSDGFYSPEFRGDFGAGLLDLHAMDDTELLSEHVVSEPFEPSPFMPGDARVFEDDFYPINNKLESGEADADTSISVPINEKEYSTRENSVAKIRVVVRKRPLNKKELAKKEDDIVTVSDNAYLTVHEPKLKVDLTAYVEKHEFCFDAVLDEHVSNDEVYRTTVEPIIPTIFERTKATCFAYGQTGSGKTYTMQPLPLRAAEDLVRQLHQPVYRNQRFKLWLSYFEIYGGKLYDLLSERKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEFIERGNAARSTGSTGANEESSRSHAILQLVVKKHNEVKESKRNNDGNEARSGKVVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPGAGSCEHTLNTLRYADRVKSLSKSGNPRKDQVLNPAPQTNKEISSTSSIPASAGAEDFIHQRQEKTMDIGRKFVERENSSYSSAATAVDKQPLSFSSSYLSNGREEKGLPSASLDRDRFELKNSYGDSTSQKMNSYSQIDTGEKLQKVSPPRRKGSKDEKSERPANWMKRDANGSDPFTTSSKQQSTGNYSTVSKDEKSDRPSNWMKRDSSSSDLFTTSSKQQSTGNNVSKDEKSERPANWMKRDASNSGMFSTSSKQPSTGNYNNITTGSRPYEGESSPNGNINAVLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSLIDNYVTQLSFVLSRKAAGLVGLQARLARFQHRLKEQEILSRKRVPRQ 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1526g00020 874 PANTHER KINESIN-RELATED PROTEIN 6 17 871 IPR027640 GO:0003777|GO:0007018
Vium1526g00020 874 ProSiteProfiles Kinesin motor domain profile. 189 523 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1526g00020 874 MobiDBLite consensus disorder prediction 675 695 - -
Vium1526g00020 874 MobiDBLite consensus disorder prediction 626 646 - -
Vium1526g00020 874 SMART kinesin_4 187 529 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1526g00020 874 MobiDBLite consensus disorder prediction 523 559 - -
Vium1526g00020 874 MobiDBLite consensus disorder prediction 710 731 - -
Vium1526g00020 874 MobiDBLite consensus disorder prediction 748 785 - -
Vium1526g00020 874 Coils Coil 790 821 - -
Vium1526g00020 874 MobiDBLite consensus disorder prediction 527 554 - -
Vium1526g00020 874 MobiDBLite consensus disorder prediction 626 785 - -
Vium1526g00020 874 FunFam Kinesin-like protein 168 526 - -
Vium1526g00020 874 Pfam Kinesin motor domain 195 522 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1526g00020 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 523 IPR027417 -
Vium1526g00020 874 ProSitePatterns Kinesin motor domain signature. 422 433 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vium1526g00020 874 PRINTS Kinesin heavy chain signature 270 291 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1526g00020 874 PRINTS Kinesin heavy chain signature 473 494 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1526g00020 874 PRINTS Kinesin heavy chain signature 380 397 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1526g00020 874 PRINTS Kinesin heavy chain signature 423 441 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1526g00020 874 Coils Coil 846 866 - -
Vium1526g00020 874 CDD KISc_KIF2_like 189 521 - -
Vium1526g00020 874 MobiDBLite consensus disorder prediction 648 671 - -
Vium1526g00020 874 Gene3D Kinesin motor domain 168 526 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1526g00020 Vium-Chr1526 167418 176629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1526g00020 175 523 Calmodulin-binding Proteins AT5G65930 34.903 1.55e-44 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1526g00020 K10393 - gmx:100800014 1531.15