Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15262g00001 ATGGGGGACAAGCACCATCTCGACGACAGCAGCGATTTCACCTCCGAGGACGAAGGCACCGAGGATTACCGCCGCGGTGGCTACCACGCTATCCGAATCGGCGACACCTTCAACGCCGGTTGCTATGTCGTTCAGTCTAAGCTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACATCAAACATTCTAGGTATGTGGCTTTGAAGGTTCAGAAGAGTGCTCAGCACTACACCGAGGCGGCCATGGATGAGATAACGATTTTGCAACAGATTGCGGAGGGAGACCCTGACGATAAGAAATGTGTGGTGAAGCTTTTGGACCATTTCAAGCATTCTGGTCCCAATGGGCAGCATGTCTGCATGGTGTTTGAGTACCTTGGGGACAATCTTTTGACACTTATTAAGTACTCTGATTACCGTGGGTTGCCTATCGCCATGGTTAAGGATATTTGCTTTCATATTCTGGTTGGATTGGATTACTTGCACAAACAGCTTTCCATCATACATACTGACTTGAAGCCTGAAAACATCCTGCTTTTGTCGATGATTGATCCATCTAAGGATCCTAGGAAGTCTGGGGCGCAGCTTATTCTTCCTAATAGTAAGGACAAGATGGTGCTAGAGTCGTCAGGTGTGAAAGATACGAAGATGTTGAATGGGGATTTGGTTATGAATCACAAGAAGAAGATAAAGAGAAAAGCTAAACAAGCAGCCCATGGTTGTTTTGAGATGGAAGTTTCTGAAGGAGTTGAGGGTAATCCTGAAACTTCTGGGGCTGTGGAGTCGTCTCCTAATGCGAGTTCTACAAGGGCTTCCAGTTCTGCAGGAACTAGTAGGTTATCGGATGCTGATGGAACAAAGTTGAAAGAGCAGGGTAACAAAAGAGGAAGCCGATCAATGAGACAGAAGCTGCTGGCATCAGTTGATCTCAAGTGCAAGTTAGTGGACTTTGGTAATGCCTGCTGGACATATAAACAGTTTACTAATGATATCCAGACAAGACAGTATCGGTGCCCAGAGGTGATTCTTGGGTCAAAATATTCTACGTCTGCCGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGAGATGTGTTATTTGATCCTCACAGTGGTGACAACTTTGATAGGGATGAGACTAGATAA 1161 0.4617 MGDKHHLDDSSDFTSEDEGTEDYRRGGYHAIRIGDTFNAGCYVVQSKLGWGHFSTVWLAWDIKHSRYVALKVQKSAQHYTEAAMDEITILQQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLPIAMVKDICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGAQLILPNSKDKMVLESSGVKDTKMLNGDLVMNHKKKIKRKAKQAAHGCFEMEVSEGVEGNPETSGAVESSPNASSTRASSSAGTSRLSDADGTKLKEQGNKRGSRSMRQKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDETR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15262g00001 386 Gene3D Transferase(Phosphotransferase) domain 1 96 184 - -
Vium15262g00001 386 MobiDBLite consensus disorder prediction 248 302 - -
Vium15262g00001 386 ProSiteProfiles Protein kinase domain profile. 42 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15262g00001 386 SMART serkin_6 42 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15262g00001 386 FunFam Os03g0748400 protein 300 384 - -
Vium15262g00001 386 MobiDBLite consensus disorder prediction 1 21 - -
Vium15262g00001 386 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 12 385 - -
Vium15262g00001 386 FunFam CMGC/SRPK protein kinase 28 127 - -
Vium15262g00001 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vium15262g00001 386 Gene3D Phosphorylase Kinase; domain 1 28 127 - -
Vium15262g00001 386 Pfam Protein kinase domain 42 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15262g00001 386 Pfam Protein kinase domain 307 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15262g00001 386 Gene3D Transferase(Phosphotransferase) domain 1 308 385 - -
Vium15262g00001 386 MobiDBLite consensus disorder prediction 258 283 - -
Vium15262g00001 386 SUPERFAMILY Protein kinase-like (PK-like) 37 376 IPR011009 -
Vium15262g00001 386 MobiDBLite consensus disorder prediction 285 299 - -
Vium15262g00001 386 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15262g00001 Vium-Chr15262 2760 4697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15262g00001 7 384 EF-hand Containing Proteins AT5G22840 70.341 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vium15262g00001 Pkinase 1.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15262g00001 K08832 - gmx:100803070 712.99