Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1525g00027 ATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGTTCAAGGTGGACTATTCATGCACTCCTGAAGAAGTGCAACAGCATTTTCAGTCTTGTGGAACAGTAAACAGAGTCACCATTCGAACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTTGAGTTCCTTGAGGTGGAAGCTGTTCAGGAGGCCCTTTCGTTGAATGAATCTGAACTTCATGGGCGCCAATTAAAGGTGACAGTTAAAAGGACCAATATACCAGGGATGAAACAGTATCGTTCCCGCCAGGCGAATCCTTACGCTGGGGGCTTTCGAGGCAGAACCCCATATGCACCTCCCTTTATCTATTCTCCATATGGATATGGAAAGGTCCCAAGGTTCAGAATGGCAATGCGCTACAGCCCCTACTATTAA 435 0.4713 MKLLLCERCRPRSRRKWDLFKVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALSLNESELHGRQLKVTVKRTNIPGMKQYRSRQANPYAGGFRGRTPYAPPFIYSPYGYGKVPRFRMAMRYSPYY 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1525g00027 144 SUPERFAMILY RNA-binding domain, RBD 22 115 IPR035979 GO:0003676
Vium1525g00027 144 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 22 106 - -
Vium1525g00027 144 SMART rrm1_1 19 87 IPR000504 GO:0003723
Vium1525g00027 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 91 IPR000504 GO:0003723
Vium1525g00027 144 Gene3D - 19 95 IPR012677 -
Vium1525g00027 144 CDD RRM_II_PABPs 22 87 - -
Vium1525g00027 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 85 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1525g00027 Vium-Chr1525 139854 144283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1525g00027 22 128 Eukaryotic Initiation Factors Gene Family AT2G36660 25.000 2.62e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1525g00027 K14396 - gmx:100791351 244.588