Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1525g00026 ATGGAAAGCGATGACGACGTTGACATGCACGCAGCCGACGCCAACGAAGAATTGGATGACATGAAGAAGCGCTTGAAAGAGATGGAGGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGTTCAAGATCCTGCAACTGCTTCTGCGAGTCAGGCCAATAGAGAGGAAATAGATTCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTGCAACAGCATTTTCAGTCTTGTGGAACAGTAAACAGAGTCACCATTCGAACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTTGAGTTCCTTGAGGTGGAAGCTGTTCAGGAGGCCCTTTCGTTGAATGAATCTGAACTTCATGGGCGCCAATTAAAGGTGACAGTTAAAAGGACCAATATACCAGGGATGAAACAGTATCGTTCCCGCCAGGCGAATCCTTACGCTGGGGGCTTTCGAGGCAGAACCCCATATGCACCTCCCTTTATCTATTCTCCATATGGATATGGAAAGGTCCCAAGGTTCAGAATGGCAATGCGCTACAGCCCCTACTATTAA 594 0.4747 MESDDDVDMHAADANEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATASASQANREEIDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALSLNESELHGRQLKVTVKRTNIPGMKQYRSRQANPYAGGFRGRTPYAPPFIYSPYGYGKVPRFRMAMRYSPYY 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1525g00026 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Vium1525g00026 197 SUPERFAMILY RNA-binding domain, RBD 56 168 IPR035979 GO:0003676
Vium1525g00026 197 Gene3D - 1 152 IPR012677 -
Vium1525g00026 197 CDD RRM_II_PABPs 69 140 - -
Vium1525g00026 197 SMART rrm1_1 69 140 IPR000504 GO:0003723
Vium1525g00026 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Vium1525g00026 197 MobiDBLite consensus disorder prediction 43 63 - -
Vium1525g00026 197 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 159 - -
Vium1525g00026 197 Coils Coil 11 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1525g00026 Vium-Chr1525 139854 144302 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1525g00026 69 141 Eukaryotic Initiation Factors Gene Family AT2G36660 31.081 1.64e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1525g00026 K14396 - gmx:100791351 369.777