Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1525g00025 ATGGAAAGCGATGACGACGTTGACATGCACGCAGCCGACGCCAACGAAGAATTGGATGACATGAAGAAGCGCTTGAAAGAGATGGAGGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGTTCAAGGTCACGCTTCCACCTACAAGTTTTCTGGTTTTGTATTGCAGCAGTTGAAAGTGGACTATTCATGCACTCCTGAAGAAGTGCAACAGCATTTTCAGTCTTGTGGAACAGTAAACAGAGTCACCATTCGAACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTTGAGTTCCTTGAGGTGGAAGCTGTTCAGGAGGCCCTTTCGTTGAATGAATCTGAACTTCATGGGCGCCAATTAAAGGTGACAGTTAAAAGGACCAATATACCAGGGATGAAACAGTATCGTTCCCGCCAGGCGAATCCTTACGCTGGGGGCTTTCGAGGCAGAACCCCATATGCACCTCCCTTTATCTATTCTCCATATGGATATGGAAAGGTCCCAAGGTTCAGAATGGCAATGCGCTACAGCCCCTACTATTAA 573 0.4729 MESDDDVDMHAADANEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQGHASTYKFSGFVLQQLKVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALSLNESELHGRQLKVTVKRTNIPGMKQYRSRQANPYAGGFRGRTPYAPPFIYSPYGYGKVPRFRMAMRYSPYY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1525g00025 190 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 152 - -
Vium1525g00025 190 Gene3D - 66 141 IPR012677 -
Vium1525g00025 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 137 IPR000504 GO:0003723
Vium1525g00025 190 SMART rrm1_1 60 133 IPR000504 GO:0003723
Vium1525g00025 190 SUPERFAMILY RNA-binding domain, RBD 68 161 IPR035979 GO:0003676
Vium1525g00025 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 131 IPR000504 GO:0003723
Vium1525g00025 190 Coils Coil 11 45 - -
Vium1525g00025 190 CDD RRM_II_PABPs 68 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1525g00025 Vium-Chr1525 139854 144302 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1525g00025 68 134 Eukaryotic Initiation Factors Gene Family AT2G36660 30.882 2.79e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1525g00025 K14396 - gmx:100791351 317.005