Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1525g00013 ATGGAAGCCGCAGCGTTGAAAGTGGAGTCACTTGCGTGCATAGACTCAACCACTCTCTCTCACTCCGAGCTTCTCGCCCTTTCTCTCTCCTCTCTCTGCGCCTTCGACCTTCGCGCCACCAATGACCTCGTCACACCCAAGATCGACCCCGCGCTCTTCAACGAGAGCGCCGGCTCCCGCCGCCAGACCTACTCCCGCCCCCAGTCCTCCCCGACGGGCCGCCGCCGCCGCCTCGCCGGCCTACTGCCCGCCCCCAAGCCCCCTCCCCTCCCCGCTCACGACCCCGAGAACGCCGAAAACCTCCTCATCATCGACTACCTCAAACAACTCATCCGAGAGGACCCCAAGTTCGACCAGGTCCACCTCGCTTCCCCTTCCCTTCCCCCACCCAATGTCAAGCGCAAGCGAGGCCGCAAGCCCAAGCTCAAACTCCACCTGGAACACTGCTACCGCGGAATCGACATTCTTAACCGGAACGGCGTCGCCGTTGATCTCTCGCAGTTGGCCACCTCCCAAGACCCCTTCGCCGATGAGCTCAAGAGGCGCACAGAGGGTTTGAGCAGCGAAGAAGAGCTGTTAGGGTTTTTGAGGGATTTGCCTGGCCAATGGGGGAGCCGTAGGAAGAAACGCAGGATTGTTGATGCCTCGGATTTCGGCGATGTGTTGCCGCTCAGTTGGAAGATTCTTCTCGGTTTGAAGAGGAAGGACGGTCGTGCGTGGATCTATTGCCGCAGATACATTAGCCCTAGTGGACAGCAGTTTGTGTCTTGCAAAGAGGTTTCTTCGTATTTACAGTCTCTTCTGGGTAATGGTGATGGGCAATCGCAAAGTAGTCGCAGGAGTGAAAATGTAGTGCAGGAACAGATCGTGCCTGCTGAAAATTCTGCTGGTGTCACTCCTGAACGTCAAGATCAGAGACAGATTGTTGCCGTGAACGCGGAGGTGCCTGGGTTATTTGCGGGTGCTCGGGAAAGAGTCAAGGAGGTTGCCTTGTTGGGAATTGAAAATCTTGCAGATGTGCAGATTCAAGATCTGTTTGAGTGTCGCAAGTGCAATATGAGTTTTGACGAGAAGGATTCGTACTTGCAGCACCTGTTGTCAGTTCACCAGAGGACGACAAGGCGGTACCGGCTTGGTTCCTCTGTTGGAGATGGAGTTATAATTAAAGATGGGAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTGGAAAGGCGTCGTTACAATGGTCATGTGGGGATTCATGTTAGGAATTACGTGAGGAGGGTAGAAGATTCACCAGGTCAGATTAATGTCCATAGGACAGATGACAAGTCTCCAGTAAGGGAGGACGTGCCATTAAGGATATCTAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGGTTGTGTCACGGAACCCCATCATTTAGCTAAACTGAATGGGATTCCTGCTTCGGATGTTTCTGTTGGTTACTTGGACCAAGATGGAAACTCTGAGGCTCCAATCAGTGAAAAGCAGATGGAAGATAGCTTGACTAAGAAAAATGTGGATCATCATGGAATGGATGGAAAGGTAGAGGAAGTTGATAATGATAACCGTGTGATAGATGTAAAAATGGTTACTTTTCTTGATAACATGGGTTTGTTATCTGTAAATAAGCAAGATGTTAAAGCATCCGAGACTTCTGAAGTAAAAGATGATGTGGAATTGACTATTGAGGAACTGGATCAATCTGGGATTGATTTGGATGGTGTTTCTGAAGTTCGTATACTTCCTTTATCTGAACTTAACATGATACCAGAATCTGAAAAGGGTGAAAATTCTGAATCTTCTAATGCTAAAGTTCAGTTTAAACCTGATGAAGGCATTAGTAACAAGAGTGATTTGGAATTTGGTTTAAATTGCTTGAAGGATGTACCTGTTACCGTTAGCACTGATGTCCAAGAGATGGTAATGGCAGCTTCTGAAGAAAATGTGGTACATTCTAGGGCTTTTAACTCCTCTATATCCACAGAACAACCTATGGATTGTTTGCCTGCATTCAGCTCTGATAAAGGAGGAAAACAGTTTTGCCGTCTTGAAAATGAACATGATAACGTGAAGGGTCTCGAGGAATTGAGGTTTGATGAAATAGATAGTGTTGATTATGATTTTGCAAGGATTCAGGATTCTCCTTCTCCGCCTGCTGTATCAGCTGAATTGGCCAATGACGCAGTGATGGGAGAGACGTTTTTATCCTCAGTTCAGTTTGAATCACAGCTTACAACTGTATGTGTATGGTGTGGAATAGAGTTTAACCATGACGCTGTCAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAAGCAAAAATCTCTGGTCAAATCAACGTGTTGGACTGTGAATCGCCAAATGCTGGCTGTCTATAG 2418 0.4773 MEAAALKVESLACIDSTTLSHSELLALSLSSLCAFDLRATNDLVTPKIDPALFNESAGSRRQTYSRPQSSPTGRRRRLAGLLPAPKPPPLPAHDPENAENLLIIDYLKQLIREDPKFDQVHLASPSLPPPNVKRKRGRKPKLKLHLEHCYRGIDILNRNGVAVDLSQLATSQDPFADELKRRTEGLSSEEELLGFLRDLPGQWGSRRKKRRIVDASDFGDVLPLSWKILLGLKRKDGRAWIYCRRYISPSGQQFVSCKEVSSYLQSLLGNGDGQSQSSRRSENVVQEQIVPAENSAGVTPERQDQRQIVAVNAEVPGLFAGARERVKEVALLGIENLADVQIQDLFECRKCNMSFDEKDSYLQHLLSVHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRRVEDSPGQINVHRTDDKSPVREDVPLRISKMDALIEIAQNSIMEGCVTEPHHLAKLNGIPASDVSVGYLDQDGNSEAPISEKQMEDSLTKKNVDHHGMDGKVEEVDNDNRVIDVKMVTFLDNMGLLSVNKQDVKASETSEVKDDVELTIEELDQSGIDLDGVSEVRILPLSELNMIPESEKGENSESSNAKVQFKPDEGISNKSDLEFGLNCLKDVPVTVSTDVQEMVMAASEENVVHSRAFNSSISTEQPMDCLPAFSSDKGGKQFCRLENEHDNVKGLEELRFDEIDSVDYDFARIQDSPSPPAVSAELANDAVMGETFLSSVQFESQLTTVCVWCGIEFNHDAVNSEIQPDSVGFMCPACKAKISGQINVLDCESPNAGCL 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1525g00013 805 ProSiteProfiles Zinc finger C2H2 type domain profile. 346 374 IPR013087 -
Vium1525g00013 805 SUPERFAMILY DNA-binding domain 218 266 IPR016177 GO:0003677
Vium1525g00013 805 ProSiteProfiles Zinc finger C2H2 type domain profile. 393 420 IPR013087 -
Vium1525g00013 805 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 212 284 IPR001739 GO:0003677
Vium1525g00013 805 MobiDBLite consensus disorder prediction 271 301 - -
Vium1525g00013 805 MobiDBLite consensus disorder prediction 54 95 - -
Vium1525g00013 805 SMART c2h2final6 393 415 IPR013087 -
Vium1525g00013 805 SMART c2h2final6 346 369 IPR013087 -
Vium1525g00013 805 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 4 599 IPR037472 -
Vium1525g00013 805 ProSitePatterns Zinc finger C2H2 type domain signature. 395 415 IPR013087 -
Vium1525g00013 805 MobiDBLite consensus disorder prediction 56 72 - -
Vium1525g00013 805 ProSitePatterns Zinc finger C2H2 type domain signature. 348 369 IPR013087 -
Vium1525g00013 805 Gene3D Classic Zinc Finger 335 418 - -
Vium1525g00013 805 SUPERFAMILY beta-beta-alpha zinc fingers 345 415 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1525g00013 Vium-Chr1525 59470 64148 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1525g00013 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1525g00013 - - var:108341719 1394.02